Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:130774951-131407522

31 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Caln1	5	130369356 to 130846325	476969	+	protein coding gene	calneuron 1
Gm23761	5	130782701 to 130782804	103	+	snRNA gene	predicted gene, 23761
Tssr49071	5	130836764 to 130836768	4	+	TSS region	transcription start site region 49071
Cpgi16703	5	130839251 to 130839501	250		CpG island	CpG island 16703
C030007I01Rik	5	130844422 to 130844899	477		unclassified gene	RIKEN cDNA C030007I01 gene
Tssr49072	5	130845095 to 130845107	12	+	TSS region	transcription start site region 49072
Tssr49073	5	130845119 to 130845141	22	+	TSS region	transcription start site region 49073
D5Mit29	5	130849911 to 130850064	153		DNA segment	DNA segment, Chr 5, Massachusetts Institute of Technology 29
Gm40337	5	130854125 to 130855241	1116	-	lncRNA gene	predicted gene, 40337
Gm42894	5	130864448 to 130867837	3389	-	unclassified gene	predicted gene 42894
Galnt17	5	130874951 to 131307522	432571	-	protein coding gene	polypeptide N-acetylgalactosaminyltransferase 17
Gm42897	5	130896502 to 130898613	2111	-	unclassified gene	predicted gene 42897
Tssr53544	5	130949044 to 130949048	4	-	TSS region	transcription start site region 53544
Tssr53545	5	130955724 to 130955727	3	-	TSS region	transcription start site region 53545
Gm42896	5	130958923 to 130960035	1112	-	unclassified gene	predicted gene 42896
Tssr1649	5	131011292 to 131011297	5	+	TSS region	transcription start site region 1649
Gm43165	5	131041336 to 131042970	1634	-	unclassified gene	predicted gene 43165
Cpgi16704	5	131081546 to 131081866	320		CpG island	CpG island 16704
Gm40338	5	131084677 to 131088807	4130	+	lncRNA gene	predicted gene, 40338
Tssr1650	5	131095770 to 131095812	42	-	TSS region	transcription start site region 1650
Gm43166	5	131130021 to 131134711	4690	-	sense intronic lncRNA gene	predicted gene 43166
Tssr53546	5	131168579 to 131168580	1	-	TSS region	transcription start site region 53546
Tssr53547	5	131245962 to 131245966	4	-	TSS region	transcription start site region 53547
Tssr53548	5	131290046 to 131290050	4	-	TSS region	transcription start site region 53548
Cpgi16705	5	131306222 to 131308174	1952		CpG island	CpG island 16705
Tssr53549	5	131307254 to 131307294	40	-	TSS region	transcription start site region 53549
Tssr53550	5	131307439 to 131307454	15	-	TSS region	transcription start site region 53550
Tssr53551	5	131307700 to 131307726	26	-	TSS region	transcription start site region 53551
Tssr53552	5	131307848 to 131307932	84	-	TSS region	transcription start site region 53552
Tssr53553	5	131308094 to 131308120	26	-	TSS region	transcription start site region 53553
Gm29681	5	131391600 to 131414718	23118	-	lincRNA gene	predicted gene, 29681