Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:130400119-131290141

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Caln1 5 130369356 to 130846325 476969 + protein coding gene calneuron 1
Cpgi16701 5 130411705 to 130411993 288 CpG island CpG island 16701
Cpgi16702 5 130448387 to 130450021 1634 CpG island CpG island 16702
Tssr49066 5 130448815 to 130448830 15 + TSS region transcription start site region 49066
Tssr49067 5 130448836 to 130448856 20 + TSS region transcription start site region 49067
Tssr49068 5 130449374 to 130449438 64 + TSS region transcription start site region 49068
D5Mit1006 5 130456403 to 130456516 113 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 1006
Tssr49069 5 130508089 to 130508099 10 + TSS region transcription start site region 49069
D5Mit164 5 130530948 to 130531089 141 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 164
Gm43418 5 130618124 to 130618551 427 - unclassified gene predicted gene 43418
Tssr49070 5 130677560 to 130677561 1 + TSS region transcription start site region 49070
Gm23761 5 130782701 to 130782804 103 + snRNA gene predicted gene, 23761
Tssr49071 5 130836764 to 130836768 4 + TSS region transcription start site region 49071
Cpgi16703 5 130839251 to 130839501 250 CpG island CpG island 16703
C030007I01Rik 5 130844422 to 130844899 477 unclassified gene RIKEN cDNA C030007I01 gene
Tssr49072 5 130845095 to 130845107 12 + TSS region transcription start site region 49072
Tssr49073 5 130845119 to 130845141 22 + TSS region transcription start site region 49073
D5Mit29 5 130849911 to 130850064 153 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 29
Gm40337 5 130854125 to 130855241 1116 - lncRNA gene predicted gene, 40337
Gm42894 5 130864448 to 130867837 3389 - unclassified gene predicted gene 42894
Galnt17 5 130874951 to 131307522 432571 - protein coding gene polypeptide N-acetylgalactosaminyltransferase 17
Gm42897 5 130896502 to 130898613 2111 - unclassified gene predicted gene 42897
Tssr53544 5 130949044 to 130949048 4 - TSS region transcription start site region 53544
Tssr53545 5 130955724 to 130955727 3 - TSS region transcription start site region 53545
Gm42896 5 130958923 to 130960035 1112 - unclassified gene predicted gene 42896
Tssr1649 5 131011292 to 131011297 5 + TSS region transcription start site region 1649
Gm43165 5 131041336 to 131042970 1634 - unclassified gene predicted gene 43165
Cpgi16704 5 131081546 to 131081866 320 CpG island CpG island 16704
Gm40338 5 131084677 to 131088807 4130 + lncRNA gene predicted gene, 40338
Tssr1650 5 131095770 to 131095812 42 - TSS region transcription start site region 1650
Gm43166 5 131130021 to 131134711 4690 - sense intronic lncRNA gene predicted gene 43166
Tssr53546 5 131168579 to 131168580 1 - TSS region transcription start site region 53546
Tssr53547 5 131245962 to 131245966 4 - TSS region transcription start site region 53547
Tssr53548 5 131290046 to 131290050 4 - TSS region transcription start site region 53548