Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:130277153-130473507

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21 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tyw1 5 130255619 to 130341563 85944 + protein coding gene tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)
Tssr49057 5 130280942 to 130280952 10 + TSS region transcription start site region 49057
D5Mit245 5 130300108 to 130300252 144 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 245
Tssr49058 5 130369247 to 130369289 42 + TSS region transcription start site region 49058
Caln1 5 130369356 to 130846325 476969 + protein coding gene calneuron 1
Cpgi16700 5 130369372 to 130369581 209 CpG island CpG island 16700
Tssr49059 5 130369407 to 130369417 10 + TSS region transcription start site region 49059
Tssr49060 5 130369420 to 130369474 54 + TSS region transcription start site region 49060
Tssr49061 5 130369481 to 130369495 14 + TSS region transcription start site region 49061
Tssr49062 5 130369522 to 130369525 3 + TSS region transcription start site region 49062
Gm40336 5 130372153 to 130378507 6354 - lncRNA gene predicted gene, 40336
A330070K13Rik 5 130378851 to 130384631 5780 - protein coding gene RIKEN cDNA A330070K13 gene
Tssr49063 5 130384565 to 130384588 23 + TSS region transcription start site region 49063
Tssr49064 5 130384692 to 130384717 25 + TSS region transcription start site region 49064
Tssr49065 5 130384718 to 130384760 42 + TSS region transcription start site region 49065
Cpgi16701 5 130411705 to 130411993 288 CpG island CpG island 16701
Cpgi16702 5 130448387 to 130450021 1634 CpG island CpG island 16702
Tssr49066 5 130448815 to 130448830 15 + TSS region transcription start site region 49066
Tssr49067 5 130448836 to 130448856 20 + TSS region transcription start site region 49067
Tssr49068 5 130449374 to 130449438 64 + TSS region transcription start site region 49068
D5Mit1006 5 130456403 to 130456516 113 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 1006