Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:130209125-131500241

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rabgef1 5 130171798 to 130214342 42544 + protein coding gene RAB guanine nucleotide exchange factor (GEF) 1
Tssr1647 5 130213742 to 130213746 4 + TSS region transcription start site region 1647
Tssr49047 5 130219534 to 130219549 15 + TSS region transcription start site region 49047
Tssr49048 5 130219706 to 130219720 14 + TSS region transcription start site region 49048
Tmem248 5 130219744 to 130243765 24021 + protein coding gene transmembrane protein 248
Gm6598 5 130220451 to 130223063 2612 - antisense lncRNA gene predicted gene 6598
Cpgi16697 5 130221898 to 130222930 1032 CpG island CpG island 16697
Tssr53530 5 130222216 to 130222233 17 - TSS region transcription start site region 53530
Tssr49049 5 130222302 to 130222316 14 + TSS region transcription start site region 49049
Tssr49050 5 130222328 to 130222390 62 + TSS region transcription start site region 49050
Tssr49051 5 130222391 to 130222403 12 + TSS region transcription start site region 49051
Tssr49052 5 130222410 to 130222425 15 + TSS region transcription start site region 49052
Tssr49053 5 130223913 to 130223929 16 + TSS region transcription start site region 49053
Tssr1648 5 130224163 to 130224169 6 + TSS region transcription start site region 1648
Gm42467 5 130226216 to 130227662 1446 + unclassified gene predicted gene 42467
Tssr49054 5 130242157 to 130242160 3 + TSS region transcription start site region 49054
Sbds 5 130245731 to 130255530 9799 - protein coding gene SBDS ribosome maturation factor
Tssr53531 5 130245944 to 130245949 5 - TSS region transcription start site region 53531
Tssr53532 5 130248048 to 130248052 4 - TSS region transcription start site region 53532
Tssr53533 5 130250882 to 130250899 17 - TSS region transcription start site region 53533
Tssr53534 5 130254248 to 130254252 4 - TSS region transcription start site region 53534
Tssr53535 5 130254376 to 130254431 55 - TSS region transcription start site region 53535
Cpgi16698 5 130255022 to 130255699 677 CpG island CpG island 16698
Tssr53536 5 130255330 to 130255339 9 - TSS region transcription start site region 53536
Tssr53537 5 130255343 to 130255378 35 - TSS region transcription start site region 53537
Tssr53538 5 130255380 to 130255391 11 - TSS region transcription start site region 53538
Tssr53539 5 130255394 to 130255399 5 - TSS region transcription start site region 53539
Tssr53540 5 130255409 to 130255418 9 - TSS region transcription start site region 53540
Tssr53541 5 130255422 to 130255509 87 - TSS region transcription start site region 53541
Tssr53542 5 130255525 to 130255537 12 - TSS region transcription start site region 53542
Tssr49055 5 130255590 to 130255630 40 + TSS region transcription start site region 49055
Tyw1 5 130255619 to 130341563 85944 + protein coding gene tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)
Tssr53543 5 130256804 to 130256809 5 - TSS region transcription start site region 53543
Cpgi16699 5 130256840 to 130257218 378 CpG island CpG island 16699
Tssr49056 5 130257029 to 130257072 43 + TSS region transcription start site region 49056
Tssr49057 5 130280942 to 130280952 10 + TSS region transcription start site region 49057
D5Mit245 5 130300108 to 130300252 144 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 245
Tssr49058 5 130369247 to 130369289 42 + TSS region transcription start site region 49058
Caln1 5 130369356 to 130846325 476969 + protein coding gene calneuron 1
Cpgi16700 5 130369372 to 130369581 209 CpG island CpG island 16700
Tssr49059 5 130369407 to 130369417 10 + TSS region transcription start site region 49059
Tssr49060 5 130369420 to 130369474 54 + TSS region transcription start site region 49060
Tssr49061 5 130369481 to 130369495 14 + TSS region transcription start site region 49061
Tssr49062 5 130369522 to 130369525 3 + TSS region transcription start site region 49062
Gm40336 5 130372153 to 130378507 6354 - lncRNA gene predicted gene, 40336
A330070K13Rik 5 130378851 to 130384631 5780 - protein coding gene RIKEN cDNA A330070K13 gene
Tssr49063 5 130384565 to 130384588 23 + TSS region transcription start site region 49063
Tssr49064 5 130384692 to 130384717 25 + TSS region transcription start site region 49064
Tssr49065 5 130384718 to 130384760 42 + TSS region transcription start site region 49065
Cpgi16701 5 130411705 to 130411993 288 CpG island CpG island 16701
Cpgi16702 5 130448387 to 130450021 1634 CpG island CpG island 16702
Tssr49066 5 130448815 to 130448830 15 + TSS region transcription start site region 49066
Tssr49067 5 130448836 to 130448856 20 + TSS region transcription start site region 49067
Tssr49068 5 130449374 to 130449438 64 + TSS region transcription start site region 49068
D5Mit1006 5 130456403 to 130456516 113 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 1006
Tssr49069 5 130508089 to 130508099 10 + TSS region transcription start site region 49069
D5Mit164 5 130530948 to 130531089 141 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 164
Gm43418 5 130618124 to 130618551 427 - unclassified gene predicted gene 43418
Tssr49070 5 130677560 to 130677561 1 + TSS region transcription start site region 49070
Gm23761 5 130782701 to 130782804 103 + snRNA gene predicted gene, 23761
Tssr49071 5 130836764 to 130836768 4 + TSS region transcription start site region 49071
Cpgi16703 5 130839251 to 130839501 250 CpG island CpG island 16703
C030007I01Rik 5 130844422 to 130844899 477 unclassified gene RIKEN cDNA C030007I01 gene
Tssr49072 5 130845095 to 130845107 12 + TSS region transcription start site region 49072
Tssr49073 5 130845119 to 130845141 22 + TSS region transcription start site region 49073
D5Mit29 5 130849911 to 130850064 153 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 29
Gm40337 5 130854125 to 130855241 1116 - lncRNA gene predicted gene, 40337
Gm42894 5 130864448 to 130867837 3389 - unclassified gene predicted gene 42894
Galnt17 5 130874951 to 131307522 432571 - protein coding gene polypeptide N-acetylgalactosaminyltransferase 17
Gm42897 5 130896502 to 130898613 2111 - unclassified gene predicted gene 42897
Tssr53544 5 130949044 to 130949048 4 - TSS region transcription start site region 53544
Tssr53545 5 130955724 to 130955727 3 - TSS region transcription start site region 53545
Gm42896 5 130958923 to 130960035 1112 - unclassified gene predicted gene 42896
Tssr1649 5 131011292 to 131011297 5 + TSS region transcription start site region 1649
Gm43165 5 131041336 to 131042970 1634 - unclassified gene predicted gene 43165
Cpgi16704 5 131081546 to 131081866 320 CpG island CpG island 16704
Gm40338 5 131084677 to 131088807 4130 + lncRNA gene predicted gene, 40338
Tssr1650 5 131095770 to 131095812 42 - TSS region transcription start site region 1650
Gm43166 5 131130021 to 131134711 4690 - sense intronic lncRNA gene predicted gene 43166
Tssr53546 5 131168579 to 131168580 1 - TSS region transcription start site region 53546
Tssr53547 5 131245962 to 131245966 4 - TSS region transcription start site region 53547
Tssr53548 5 131290046 to 131290050 4 - TSS region transcription start site region 53548
Cpgi16705 5 131306222 to 131308174 1952 CpG island CpG island 16705
Tssr53549 5 131307254 to 131307294 40 - TSS region transcription start site region 53549
Tssr53550 5 131307439 to 131307454 15 - TSS region transcription start site region 53550
Tssr53551 5 131307700 to 131307726 26 - TSS region transcription start site region 53551
Tssr53552 5 131307848 to 131307932 84 - TSS region transcription start site region 53552
Tssr53553 5 131308094 to 131308120 26 - TSS region transcription start site region 53553
Gm29681 5 131391600 to 131414718 23118 - lincRNA gene predicted gene, 29681
D5Mit262 5 131418487 to 131418617 130 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 262
Auts2 5 131437682 to 132542343 1104661 - protein coding gene autism susceptibility candidate 2
Tssr53554 5 131438810 to 131438822 12 - TSS region transcription start site region 53554
Cpgi16706 5 131439459 to 131440630 1171 CpG island CpG island 16706
Tssr1651 5 131472371 to 131472388 17 - TSS region transcription start site region 1651
Tssr53555 5 131472396 to 131472418 22 - TSS region transcription start site region 53555
Tssr53556 5 131476668 to 131476698 30 - TSS region transcription start site region 53556
Tssr49074 5 131494875 to 131494880 5 + TSS region transcription start site region 49074
Tssr53557 5 131495772 to 131495779 7 - TSS region transcription start site region 53557