Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:129973326-130235729

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vkorc1l1 5 129942109 to 129986692 44583 + protein coding gene vitamin K epoxide reductase complex, subunit 1-like 1
Tssr49029 5 129978944 to 129978952 8 + TSS region transcription start site region 49029
Gusb 5 129989011 to 130003044 14033 - protein coding gene glucuronidase, beta
Tssr49030 5 129989019 to 129989040 21 + TSS region transcription start site region 49030
Tssr53503 5 129993587 to 129993601 14 - TSS region transcription start site region 53503
Tssr53504 5 129995488 to 129995510 22 - TSS region transcription start site region 53504
Cpgi16689 5 129997815 to 129998229 414 CpG island CpG island 16689
Tssr53505 5 129997854 to 129997866 12 - TSS region transcription start site region 53505
Tssr53506 5 129998119 to 129998134 15 - TSS region transcription start site region 53506
D5Mit27 5 130000063 to 130000203 140 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 27
Tssr53507 5 130000401 to 130000417 16 - TSS region transcription start site region 53507
Tssr53508 5 130000816 to 130000852 36 - TSS region transcription start site region 53508
Tssr53509 5 130000858 to 130000877 19 - TSS region transcription start site region 53509
Tssr53510 5 130000924 to 130000955 31 - TSS region transcription start site region 53510
Cpgi16690 5 130002431 to 130002944 513 CpG island CpG island 16690
Tssr53511 5 130002653 to 130002689 36 - TSS region transcription start site region 53511
Tssr53512 5 130002813 to 130002834 21 - TSS region transcription start site region 53512
Tssr53513 5 130002838 to 130002893 55 - TSS region transcription start site region 53513
Tssr53514 5 130003000 to 130003012 12 - TSS region transcription start site region 53514
Asl 5 130011498 to 130024331 12833 - protein coding gene argininosuccinate lyase
Tssr53515 5 130013439 to 130013473 34 - TSS region transcription start site region 53515
Tssr53516 5 130013992 to 130014032 40 - TSS region transcription start site region 53516
Cpgi16691 5 130016147 to 130016531 384 CpG island CpG island 16691
Tssr53517 5 130016827 to 130016833 6 - TSS region transcription start site region 53517
Tssr53518 5 130023228 to 130023233 5 - TSS region transcription start site region 53518
Cpgi16692 5 130023846 to 130024405 559 CpG island CpG island 16692
Tssr53519 5 130024280 to 130024357 77 - TSS region transcription start site region 53519
Gm40334 5 130025128 to 130028108 2980 - lncRNA gene predicted gene, 40334
Cpgi16693 5 130029153 to 130029712 559 CpG island CpG island 16693
Tssr49031 5 130029277 to 130029340 63 + TSS region transcription start site region 49031
Crcp 5 130029306 to 130060787 31481 + protein coding gene calcitonin gene-related peptide-receptor component protein
Tssr49032 5 130029345 to 130029378 33 + TSS region transcription start site region 49032
Tssr49033 5 130029385 to 130029396 11 + TSS region transcription start site region 49033
Tpst1 5 130073326 to 130135729 62403 + protein coding gene protein-tyrosine sulfotransferase 1
Cpgi16694 5 130078935 to 130080225 1290 CpG island CpG island 16694
Tssr49034 5 130079391 to 130079403 12 + TSS region transcription start site region 49034
Tssr49035 5 130079426 to 130079435 9 + TSS region transcription start site region 49035
Tssr49036 5 130079439 to 130079448 9 + TSS region transcription start site region 49036
Tssr49037 5 130079452 to 130079461 9 + TSS region transcription start site region 49037
Tssr49038 5 130079478 to 130079492 14 + TSS region transcription start site region 49038
Tssr53520 5 130081349 to 130081382 33 - TSS region transcription start site region 53520
2210412B16Rik 5 130131327 to 130131824 497 + unclassified gene RIKEN cDNA 2210412B16 gene
Cpgi16695 5 130144061 to 130145407 1346 CpG island CpG island 16695
Tssr53521 5 130144470 to 130144491 21 - TSS region transcription start site region 53521
Kctd7 5 130144861 to 130155806 10945 + protein coding gene potassium channel tetramerisation domain containing 7
Tssr49039 5 130144872 to 130144937 65 + TSS region transcription start site region 49039
Tssr49040 5 130145065 to 130145083 18 + TSS region transcription start site region 49040
Tssr49041 5 130145102 to 130145125 23 + TSS region transcription start site region 49041
Cpgi16696 5 130171358 to 130172583 1225 CpG island CpG island 16696
Tssr53522 5 130171541 to 130171568 27 - TSS region transcription start site region 53522
Tssr53523 5 130171570 to 130171590 20 - TSS region transcription start site region 53523
Tssr53524 5 130171724 to 130171748 24 - TSS region transcription start site region 53524
Rabgef1 5 130171798 to 130214342 42544 + protein coding gene RAB guanine nucleotide exchange factor (GEF) 1
Tssr49042 5 130171813 to 130171879 66 + TSS region transcription start site region 49042
Tssr53525 5 130172348 to 130172362 14 - TSS region transcription start site region 53525
Tssr53526 5 130172410 to 130172440 30 - TSS region transcription start site region 53526
Tssr53527 5 130172462 to 130172471 9 - TSS region transcription start site region 53527
Tssr53528 5 130172573 to 130172585 12 - TSS region transcription start site region 53528
Tssr53529 5 130172596 to 130172606 10 - TSS region transcription start site region 53529
Tssr49043 5 130187158 to 130187166 8 + TSS region transcription start site region 49043
Tssr49044 5 130187189 to 130187203 14 + TSS region transcription start site region 49044
Gm15920 5 130188395 to 130188796 401 + pseudogene predicted gene 15920
Tssr49045 5 130188423 to 130188425 2 + TSS region transcription start site region 49045
Tssr49046 5 130204931 to 130204938 7 + TSS region transcription start site region 49046
Gm15921 5 130208080 to 130208562 482 - pseudogene predicted gene 15921
Tssr1647 5 130213742 to 130213746 4 + TSS region transcription start site region 1647
Tssr49047 5 130219534 to 130219549 15 + TSS region transcription start site region 49047
Tssr49048 5 130219706 to 130219720 14 + TSS region transcription start site region 49048
Tmem248 5 130219744 to 130243765 24021 + protein coding gene transmembrane protein 248
Gm6598 5 130220451 to 130223063 2612 - antisense lncRNA gene predicted gene 6598
Cpgi16697 5 130221898 to 130222930 1032 CpG island CpG island 16697
Tssr53530 5 130222216 to 130222233 17 - TSS region transcription start site region 53530
Tssr49049 5 130222302 to 130222316 14 + TSS region transcription start site region 49049
Tssr49050 5 130222328 to 130222390 62 + TSS region transcription start site region 49050
Tssr49051 5 130222391 to 130222403 12 + TSS region transcription start site region 49051
Tssr49052 5 130222410 to 130222425 15 + TSS region transcription start site region 49052
Tssr49053 5 130223913 to 130223929 16 + TSS region transcription start site region 49053
Tssr1648 5 130224163 to 130224169 6 + TSS region transcription start site region 1648
Gm42467 5 130226216 to 130227662 1446 + unclassified gene predicted gene 42467