Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:129890580-130003964

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi16685 5 129895427 to 129896073 646 CpG island CpG island 16685
Zbed5 5 129895723 to 129903623 7900 + protein coding gene zinc finger, BED type containing 5
Tssr49022 5 129895746 to 129895800 54 + TSS region transcription start site region 49022
Cpgi16686 5 129908305 to 129909175 870 CpG island CpG island 16686
Tssr49023 5 129908538 to 129908593 55 + TSS region transcription start site region 49023
Nupr1l 5 129908540 to 129913789 5249 + protein coding gene nuclear protein transcriptional regulator 1 like
Tssr49024 5 129908598 to 129908616 18 + TSS region transcription start site region 49024
Tssr53502 5 129918370 to 129918380 10 - TSS region transcription start site region 53502
Tssr49025 5 129918548 to 129918569 21 + TSS region transcription start site region 49025
Cpgi16687 5 129941318 to 129942066 748 CpG island CpG island 16687
Tssr49026 5 129941902 to 129941940 38 + TSS region transcription start site region 49026
Tssr49027 5 129941949 to 129941971 22 + TSS region transcription start site region 49027
Tssr49028 5 129942042 to 129942088 46 + TSS region transcription start site region 49028
Vkorc1l1 5 129942109 to 129986692 44583 + protein coding gene vitamin K epoxide reductase complex, subunit 1-like 1
Cpgi16688 5 129942332 to 129942814 482 CpG island CpG island 16688
Gm42986 5 129945580 to 129948964 3384 + unclassified gene predicted gene 42986
Gm43482 5 129964366 to 129966226 1860 + unclassified gene predicted gene 43482
Tssr49029 5 129978944 to 129978952 8 + TSS region transcription start site region 49029
Gusb 5 129989011 to 130003044 14033 - protein coding gene glucuronidase, beta
Tssr49030 5 129989019 to 129989040 21 + TSS region transcription start site region 49030
Tssr53503 5 129993587 to 129993601 14 - TSS region transcription start site region 53503
Tssr53504 5 129995488 to 129995510 22 - TSS region transcription start site region 53504
Cpgi16689 5 129997815 to 129998229 414 CpG island CpG island 16689
Tssr53505 5 129997854 to 129997866 12 - TSS region transcription start site region 53505
Tssr53506 5 129998119 to 129998134 15 - TSS region transcription start site region 53506
D5Mit27 5 130000063 to 130000203 140 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 27
Tssr53507 5 130000401 to 130000417 16 - TSS region transcription start site region 53507
Tssr53508 5 130000816 to 130000852 36 - TSS region transcription start site region 53508
Tssr53509 5 130000858 to 130000877 19 - TSS region transcription start site region 53509
Tssr53510 5 130000924 to 130000955 31 - TSS region transcription start site region 53510
Cpgi16690 5 130002431 to 130002944 513 CpG island CpG island 16690
Tssr53511 5 130002653 to 130002689 36 - TSS region transcription start site region 53511
Tssr53512 5 130002813 to 130002834 21 - TSS region transcription start site region 53512
Tssr53513 5 130002838 to 130002893 55 - TSS region transcription start site region 53513
Tssr53514 5 130003000 to 130003012 12 - TSS region transcription start site region 53514