Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:129786862-129907144

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Psph 5 129765558 to 129787253 21695 - protein coding gene phosphoserine phosphatase
Cpgi16680 5 129786969 to 129787811 842 CpG island CpG island 16680
Tssr49015 5 129786990 to 129787058 68 + TSS region transcription start site region 49015
Tssr53492 5 129787158 to 129787173 15 - TSS region transcription start site region 53492
Tssr53493 5 129787175 to 129787259 84 - TSS region transcription start site region 53493
Cct6a 5 129787356 to 129846443 59087 + protein coding gene chaperonin containing Tcp1, subunit 6a (zeta)
Tssr49016 5 129787365 to 129787388 23 + TSS region transcription start site region 49016
Tssr49017 5 129787390 to 129787413 23 + TSS region transcription start site region 49017
Gm23245 5 129789539 to 129789673 134 + snoRNA gene predicted gene, 23245
Tssr49018 5 129791800 to 129791812 12 + TSS region transcription start site region 49018
Tssr49019 5 129794350 to 129794369 19 + TSS region transcription start site region 49019
Snora15 5 129794561 to 129794676 115 + snoRNA gene small nucleolar RNA, H/ACA box 15
Tssr49020 5 129845845 to 129845863 18 + TSS region transcription start site region 49020
Cpgi16681 5 129846862 to 129847144 282 CpG island CpG island 16681
Tssr49021 5 129846980 to 129847036 56 + TSS region transcription start site region 49021
Sumf2 5 129846990 to 129863951 16961 + protein coding gene sulfatase modifying factor 2
Cpgi16682 5 129854668 to 129854929 261 CpG island CpG island 16682
Phkg1 5 129863435 to 129879083 15648 - protein coding gene phosphorylase kinase gamma 1
Cpgi16683 5 129864455 to 129864735 280 CpG island CpG island 16683
D5Mit162 5 129872980 to 129873104 124 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 162
Tssr53494 5 129873268 to 129873273 5 - TSS region transcription start site region 53494
Gm42790 5 129875979 to 129876947 968 - unclassified gene predicted gene 42790
Tssr53495 5 129879008 to 129879019 11 - TSS region transcription start site region 53495
Tssr53496 5 129879025 to 129879034 9 - TSS region transcription start site region 53496
Tssr53497 5 129879038 to 129879094 56 - TSS region transcription start site region 53497
Chchd2 5 129881161 to 129887470 6309 - protein coding gene coiled-coil-helix-coiled-coil-helix domain containing 2
Cpgi16684 5 129886967 to 129887621 654 CpG island CpG island 16684
Tssr53498 5 129887139 to 129887157 18 - TSS region transcription start site region 53498
Tssr53499 5 129887288 to 129887305 17 - TSS region transcription start site region 53499
Tssr53500 5 129887416 to 129887429 13 - TSS region transcription start site region 53500
Tssr53501 5 129887442 to 129887480 38 - TSS region transcription start site region 53501
Cpgi16685 5 129895427 to 129896073 646 CpG island CpG island 16685
Zbed5 5 129895723 to 129903623 7900 + protein coding gene zinc finger, BED type containing 5
Tssr49022 5 129895746 to 129895800 54 + TSS region transcription start site region 49022