Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:12969918-16408459

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm10481 5 13042433 to 13043434 1001 - pseudogene predicted gene 10481
Gm6641 5 13080828 to 13082142 1314 + pseudogene predicted gene 6641
Gm10108 5 13121448 to 13121766 318 - pseudogene predicted pseudogene 10108
Sema3a 5 13125414 to 13602565 477151 + protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
Tssr45174 5 13125458 to 13125470 12 + TSS region transcription start site region 45174
Tssr45175 5 13125474 to 13125512 38 + TSS region transcription start site region 45175
Tssr45176 5 13125513 to 13125537 24 + TSS region transcription start site region 45176
Tssr45177 5 13125558 to 13125575 17 + TSS region transcription start site region 45177
Tssr45178 5 13125585 to 13125610 25 + TSS region transcription start site region 45178
Tssr45179 5 13125613 to 13125635 22 + TSS region transcription start site region 45179
Gm42680 5 13133459 to 13135958 2499 - unclassified gene predicted gene 42680
Tssr45180 5 13398680 to 13398696 16 + TSS region transcription start site region 45180
Tssr45181 5 13398704 to 13398726 22 + TSS region transcription start site region 45181
Tssr45182 5 13398828 to 13398871 43 + TSS region transcription start site region 45182
Cpgi15549 5 13398978 to 13399582 604 CpG island CpG island 15549
Tssr45183 5 13399325 to 13399382 57 + TSS region transcription start site region 45183
Tssr45184 5 13399387 to 13399415 28 + TSS region transcription start site region 45184
Tssr45185 5 13399495 to 13399519 24 + TSS region transcription start site region 45185
Tssr45186 5 13399751 to 13399765 14 + TSS region transcription start site region 45186
Gm43130 5 13481028 to 13484934 3906 + unclassified gene predicted gene 43130
Gm42676 5 13525723 to 13528408 2685 + unclassified gene predicted gene 42676
Gm42675 5 13548694 to 13552728 4034 + unclassified gene predicted gene 42675
Tssr1423 5 13587486 to 13587489 3 + TSS region transcription start site region 1423
Gm43719 5 13604035 to 13606233 2198 + unclassified gene predicted gene 43719
Gm43718 5 13615959 to 13617815 1856 - unclassified gene predicted gene 43718
Gm4751 5 13763618 to 13764722 1104 + pseudogene predicted gene 4751
Gm6647 5 13768662 to 13771887 3225 + pseudogene predicted gene 6647
4930568A13Rik 5 13774326 to 13808284 33958 - lincRNA gene RIKEN cDNA 4930568A13 gene
Speer3 5 13791619 to 13796819 5200 + protein coding gene spermatogenesis associated glutamate (E)-rich protein 3
Gm6650 5 13811242 to 13814452 3210 + pseudogene predicted gene 6650
Gm8968 5 13838233 to 13839535 1302 - pseudogene predicted gene 8968
Gm35702 5 13877166 to 13877676 510 + pseudogene predicted gene, 35702
Dnd1-ps 5 13879219 to 13880182 963 + pseudogene DND microRNA-mediated repression inhibitor 1, pseudogene
Cpgi15550 5 13879369 to 13879723 354 CpG island CpG island 15550
Gm24054 5 13902770 to 13902874 104 - miRNA gene predicted gene, 24054
Cpgi15551 5 14025162 to 14025768 606 CpG island CpG island 15551
Tssr45187 5 14025267 to 14025291 24 + TSS region transcription start site region 45187
Sema3e 5 14025276 to 14256689 231413 + protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E
Tssr45188 5 14025305 to 14025327 22 + TSS region transcription start site region 45188
Tssr45189 5 14025338 to 14025373 35 + TSS region transcription start site region 45189
Tssr45190 5 14025416 to 14025472 56 + TSS region transcription start site region 45190
Tssr45191 5 14025474 to 14025488 14 + TSS region transcription start site region 45191
Tssr45192 5 14025593 to 14025604 11 + TSS region transcription start site region 45192
Tssr45193 5 14025609 to 14025625 16 + TSS region transcription start site region 45193
Gm43519 5 14027894 to 14029765 1871 + unclassified gene predicted gene 43519
Tssr45194 5 14027915 to 14027920 5 + TSS region transcription start site region 45194
Tssr45195 5 14032733 to 14032734 1 + TSS region transcription start site region 45195
Gm4128 5 14056438 to 14074157 17719 - antisense lncRNA gene predicted gene 4128
Tssr45196 5 14144446 to 14144450 4 + TSS region transcription start site region 45196
Gm43523 5 14242462 to 14245339 2877 + unclassified gene predicted gene 43523
Cpgi15552 5 14514609 to 14515718 1109 CpG island CpG island 15552
Pclo 5 14514918 to 14863459 348541 + protein coding gene piccolo (presynaptic cytomatrix protein)
Tssr45197 5 14514929 to 14514951 22 + TSS region transcription start site region 45197
Tssr45198 5 14514952 to 14514991 39 + TSS region transcription start site region 45198
Tssr45199 5 14514995 to 14514996 1 + TSS region transcription start site region 45199
Tssr45200 5 14515002 to 14515018 16 + TSS region transcription start site region 45200
Gm26918 5 14520673 to 14539852 19179 - antisense lncRNA gene predicted gene, 26918
Tssr45201 5 14520897 to 14520908 11 + TSS region transcription start site region 45201
Tssr45202 5 14521603 to 14521615 12 + TSS region transcription start site region 45202
Tssr45203 5 14521703 to 14521719 16 + TSS region transcription start site region 45203
Gm42446 5 14563338 to 14566621 3283 + unclassified gene predicted gene 42446
Gm42447 5 14596864 to 14599766 2902 + unclassified gene predicted gene 42447
Gm42448 5 14599919 to 14602562 2643 + unclassified gene predicted gene 42448
Gm42444 5 14604049 to 14608606 4557 + unclassified gene predicted gene 42444
Gm42445 5 14611652 to 14614544 2892 + unclassified gene predicted gene 42445
Gm43663 5 14665649 to 14667153 1504 + unclassified gene predicted gene 43663
Tssr45204 5 14669026 to 14669039 13 + TSS region transcription start site region 45204
Tssr45205 5 14669052 to 14669086 34 + TSS region transcription start site region 45205
Tssr45206 5 14677450 to 14677452 2 + TSS region transcription start site region 45206
Tssr45207 5 14684954 to 14684958 4 + TSS region transcription start site region 45207
Tssr50123 5 14692959 to 14692960 1 - TSS region transcription start site region 50123
Gm26954 5 14696985 to 14723664 26679 - antisense lncRNA gene predicted gene, 26954
Tssr50124 5 14723666 to 14723679 13 - TSS region transcription start site region 50124
Tssr50125 5 14723681 to 14723698 17 - TSS region transcription start site region 50125
Tssr50126 5 14723699 to 14723704 5 - TSS region transcription start site region 50126
Tssr50127 5 14723708 to 14723721 13 - TSS region transcription start site region 50127
Tssr50128 5 14723731 to 14723740 9 - TSS region transcription start site region 50128
Gm43662 5 14778932 to 14781202 2270 + unclassified gene predicted gene 43662
Gm18668 5 14783234 to 14784377 1143 + pseudogene predicted gene, 18668
Gm43665 5 14804901 to 14806559 1658 + unclassified gene predicted gene 43665
Gm9758 5 14910122 to 14914899 4777 - protein coding gene predicted gene 9758
D5Mit103a 5 14931998 to 14932222 224 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 103a
Speer4e 5 14933631 to 14938475 4844 - protein coding gene spermatogenesis associated glutamate (E)-rich protein 4e
Speer8-ps1 5 14945294 to 14978541 33247 + pseudogene spermatogenesis associated glutamate (E)-rich protein 8, pseudogene 1
Gm10354 5 14974113 to 14978935 4822 - protein coding gene predicted gene 10354
D5Mit103b 5 15027288 to 15027520 232 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 103b
Gm17019 5 15028950 to 15032998 4048 - protein coding gene predicted gene 17019
Gm43391 5 15464171 to 15478876 14705 + antisense lncRNA gene predicted gene 43391
Gm21149 5 15471703 to 15476523 4820 - protein coding gene predicted gene, 21149
9930105H17Rik 5 15498801 to 15501506 2705 unclassified non-coding RNA gene RIKEN cDNA 9930105H17 gene
Tssr1424 5 15507059 to 15507070 11 - TSS region transcription start site region 1424
Gm21847 5 15511563 to 15525867 14304 + antisense lncRNA gene predicted gene, 21847
Gm21190 5 15524456 to 15529222 4766 - protein coding gene predicted gene, 21190
Tssr1425 5 15577288 to 15577317 29 + TSS region transcription start site region 1425
Gm21083 5 15577333 to 15582078 4745 + protein coding gene predicted gene, 21083
Gm30613 5 15577483 to 15605125 27642 - antisense lncRNA gene predicted gene, 30613
Gm30417 5 15609971 to 15634110 24139 - lncRNA gene predicted gene, 30417
Tssr45208 5 15619087 to 15619110 23 + TSS region transcription start site region 45208
Speer4d 5 15619099 to 15623864 4765 + protein coding gene spermatogenesis associated glutamate (E)-rich protein 4D
4930572O03Rik 5 15652288 to 15657059 4771 - protein coding gene RIKEN cDNA 4930572O03 gene
Speer4cos 5 15680710 to 15714596 33886 + antisense lncRNA gene spermatogenesis associated glutamate (E)-rich protein 4C, opposite strand transcript
Speer4c 5 15709501 to 15714271 4770 - protein coding gene spermatogenesis associated glutamate (E)-rich protein 4C
Gm42452 5 15798001 to 15799033 1032 + pseudogene predicted gene 42452
Gm42454 5 15805564 to 15806744 1180 + unclassified gene predicted gene 42454
4930519H02Rik 5 15863928 to 15883766 19838 - lincRNA gene RIKEN cDNA 4930519H02 gene
Gm42453 5 15870247 to 15870655 408 + pseudogene predicted gene 42453
Tssr50129 5 15883797 to 15883805 8 - TSS region transcription start site region 50129
Tssr50130 5 15883806 to 15883810 4 - TSS region transcription start site region 50130
Tssr50131 5 15883814 to 15883833 19 - TSS region transcription start site region 50131
Gm42451 5 15900244 to 15900487 243 - pseudogene predicted gene 42451
Gm3510 5 15923755 to 15933406 9651 - lincRNA gene predicted gene 3510
Cpgi15553 5 15933981 to 15935641 1660 CpG island CpG island 15553
Tssr45209 5 15934373 to 15934397 24 + TSS region transcription start site region 45209
Tssr45210 5 15934556 to 15934624 68 + TSS region transcription start site region 45210
Tssr1426 5 15934674 to 15934679 5 + TSS region transcription start site region 1426
Tssr45211 5 15934685 to 15934696 11 + TSS region transcription start site region 45211
Cacna2d1 5 15934691 to 16374511 439820 + protein coding gene calcium channel, voltage-dependent, alpha2/delta subunit 1
Tssr45212 5 15934706 to 15934719 13 + TSS region transcription start site region 45212
Tssr45213 5 15934731 to 15934746 15 + TSS region transcription start site region 45213
Tssr45214 5 15934762 to 15934787 25 + TSS region transcription start site region 45214
Tssr1427 5 15934891 to 15934900 9 + TSS region transcription start site region 1427
Tssr45215 5 15934913 to 15934926 13 + TSS region transcription start site region 45215
Tssr45216 5 15934953 to 15934962 9 + TSS region transcription start site region 45216
6720420G18Rik 5 15969941 to 15971044 1103 unclassified gene RIKEN cDNA 6720420G18 gene
Tssr45217 5 15991096 to 15991097 1 + TSS region transcription start site region 45217
9630055L06Rik 5 15993956 to 15999061 5105 lncRNA gene RIKEN cDNA 9630055L06 gene
Gm43000 5 15993957 to 15997839 3882 - antisense lncRNA gene predicted gene 43000
Tssr45218 5 16008810 to 16008811 1 + TSS region transcription start site region 45218
D5Mit226 5 16010646 to 16010769 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 226
Gm43490 5 16107129 to 16109780 2651 + unclassified gene predicted gene 43490
Tssr1428 5 16181274 to 16181281 7 + TSS region transcription start site region 1428
Tssr45219 5 16293333 to 16293337 4 + TSS region transcription start site region 45219
Tssr45220 5 16296820 to 16296824 4 + TSS region transcription start site region 45220
Gm43491 5 16343398 to 16344181 783 - pseudogene predicted gene 43491