Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:129350343-131160378

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233 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lprq4 5 113883692 to 129555542 15671850 QTL lipoprotein QTL 4
Tssr49005 5 129363543 to 129363581 38 + TSS region transcription start site region 49005
Gm43001 5 129363562 to 129364721 1159 + lincRNA gene predicted gene 43001
Gm34468 5 129493231 to 129497417 4186 + lncRNA gene predicted gene, 34468
Gm40333 5 129493873 to 129494379 506 - lncRNA gene predicted gene, 40333
Gm40332 5 129500250 to 129501163 913 - lncRNA gene predicted gene, 40332
Cpgi16672 5 129500747 to 129502293 1546 CpG island CpG island 16672
Tssr49006 5 129501223 to 129501253 30 + TSS region transcription start site region 49006
Sfswap 5 129501231 to 129571384 70153 + protein coding gene splicing factor SWAP
Tssr49007 5 129511179 to 129511182 3 + TSS region transcription start site region 49007
D5Mit30 5 129555399 to 129555542 143 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 30
Gm42979 5 129556147 to 129558374 2227 + unclassified gene predicted gene 42979
Cpgi16673 5 129583533 to 129585598 2065 CpG island CpG island 16673
Mmp17 5 129584169 to 129611099 26930 + protein coding gene matrix metallopeptidase 17
Tssr49008 5 129584173 to 129584232 59 + TSS region transcription start site region 49008
Cpgi16674 5 129586268 to 129586606 338 CpG island CpG island 16674
Gm6139 5 129622990 to 129623871 881 - pseudogene predicted gene 6139
Gm18390 5 129634262 to 129640299 6037 + pseudogene predicted gene, 18390
Zfp11 5 129654595 to 129670088 15493 - protein coding gene zinc finger protein 11
Cpgi16675 5 129669793 to 129670425 632 CpG island CpG island 16675
Tssr53484 5 129670050 to 129670062 12 - TSS region transcription start site region 53484
Tssr53485 5 129670074 to 129670100 26 - TSS region transcription start site region 53485
Tssr53486 5 129670103 to 129670115 12 - TSS region transcription start site region 53486
Tssr53487 5 129682320 to 129682323 3 - TSS region transcription start site region 53487
Sept14 5 129683391 to 129708511 25120 - protein coding gene septin 14
Tssr1646 5 129704950 to 129704953 3 - TSS region transcription start site region 1646
Tssr53488 5 129704964 to 129704989 25 - TSS region transcription start site region 53488
Cpgi16676 5 129715362 to 129715850 488 CpG island CpG island 16676
Mrps17 5 129715441 to 129718712 3271 + protein coding gene mitochondrial ribosomal protein S17
Tssr49009 5 129715488 to 129715539 51 + TSS region transcription start site region 49009
Cpgi16677 5 129724735 to 129725959 1224 CpG island CpG island 16677
Nipsnap2 5 129725063 to 129758327 33264 + protein coding gene nipsnap homolog 2
Tssr49010 5 129725081 to 129725143 62 + TSS region transcription start site region 49010
Tssr49011 5 129727043 to 129727055 12 + TSS region transcription start site region 49011
Gm15903 5 129727046 to 129731689 4643 + sense intronic lncRNA gene predicted gene 15903
Cpgi16678 5 129730375 to 129730548 173 CpG island CpG island 16678
Tssr49012 5 129747017 to 129747037 20 + TSS region transcription start site region 49012
Tssr49013 5 129755681 to 129755715 34 + TSS region transcription start site region 49013
Tssr49014 5 129757631 to 129757635 4 + TSS region transcription start site region 49014
Psph 5 129765558 to 129787253 21695 - protein coding gene phosphoserine phosphatase
Cpgi16679 5 129778858 to 129779440 582 CpG island CpG island 16679
Tssr53489 5 129779119 to 129779131 12 - TSS region transcription start site region 53489
Tssr53490 5 129779175 to 129779186 11 - TSS region transcription start site region 53490
Tssr53491 5 129779204 to 129779283 79 - TSS region transcription start site region 53491
Cpgi16680 5 129786969 to 129787811 842 CpG island CpG island 16680
Tssr49015 5 129786990 to 129787058 68 + TSS region transcription start site region 49015
Tssr53492 5 129787158 to 129787173 15 - TSS region transcription start site region 53492
Tssr53493 5 129787175 to 129787259 84 - TSS region transcription start site region 53493
Cct6a 5 129787356 to 129846443 59087 + protein coding gene chaperonin containing Tcp1, subunit 6a (zeta)
Tssr49016 5 129787365 to 129787388 23 + TSS region transcription start site region 49016
Tssr49017 5 129787390 to 129787413 23 + TSS region transcription start site region 49017
Gm23245 5 129789539 to 129789673 134 + snoRNA gene predicted gene, 23245
Tssr49018 5 129791800 to 129791812 12 + TSS region transcription start site region 49018
Tssr49019 5 129794350 to 129794369 19 + TSS region transcription start site region 49019
Snora15 5 129794561 to 129794676 115 + snoRNA gene small nucleolar RNA, H/ACA box 15
Tssr49020 5 129845845 to 129845863 18 + TSS region transcription start site region 49020
Cpgi16681 5 129846862 to 129847144 282 CpG island CpG island 16681
Tssr49021 5 129846980 to 129847036 56 + TSS region transcription start site region 49021
Sumf2 5 129846990 to 129863951 16961 + protein coding gene sulfatase modifying factor 2
Cpgi16682 5 129854668 to 129854929 261 CpG island CpG island 16682
Phkg1 5 129863435 to 129879083 15648 - protein coding gene phosphorylase kinase gamma 1
Cpgi16683 5 129864455 to 129864735 280 CpG island CpG island 16683
D5Mit162 5 129872980 to 129873104 124 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 162
Tssr53494 5 129873268 to 129873273 5 - TSS region transcription start site region 53494
Gm42790 5 129875979 to 129876947 968 - unclassified gene predicted gene 42790
Tssr53495 5 129879008 to 129879019 11 - TSS region transcription start site region 53495
Tssr53496 5 129879025 to 129879034 9 - TSS region transcription start site region 53496
Tssr53497 5 129879038 to 129879094 56 - TSS region transcription start site region 53497
Chchd2 5 129881161 to 129887470 6309 - protein coding gene coiled-coil-helix-coiled-coil-helix domain containing 2
Cpgi16684 5 129886967 to 129887621 654 CpG island CpG island 16684
Tssr53498 5 129887139 to 129887157 18 - TSS region transcription start site region 53498
Tssr53499 5 129887288 to 129887305 17 - TSS region transcription start site region 53499
Tssr53500 5 129887416 to 129887429 13 - TSS region transcription start site region 53500
Tssr53501 5 129887442 to 129887480 38 - TSS region transcription start site region 53501
Cpgi16685 5 129895427 to 129896073 646 CpG island CpG island 16685
Zbed5 5 129895723 to 129903623 7900 + protein coding gene zinc finger, BED type containing 5
Tssr49022 5 129895746 to 129895800 54 + TSS region transcription start site region 49022
Cpgi16686 5 129908305 to 129909175 870 CpG island CpG island 16686
Tssr49023 5 129908538 to 129908593 55 + TSS region transcription start site region 49023
Nupr1l 5 129908540 to 129913789 5249 + protein coding gene nuclear protein transcriptional regulator 1 like
Tssr49024 5 129908598 to 129908616 18 + TSS region transcription start site region 49024
Tssr53502 5 129918370 to 129918380 10 - TSS region transcription start site region 53502
Tssr49025 5 129918548 to 129918569 21 + TSS region transcription start site region 49025
Cpgi16687 5 129941318 to 129942066 748 CpG island CpG island 16687
Tssr49026 5 129941902 to 129941940 38 + TSS region transcription start site region 49026
Tssr49027 5 129941949 to 129941971 22 + TSS region transcription start site region 49027
Tssr49028 5 129942042 to 129942088 46 + TSS region transcription start site region 49028
Vkorc1l1 5 129942109 to 129986692 44583 + protein coding gene vitamin K epoxide reductase complex, subunit 1-like 1
Cpgi16688 5 129942332 to 129942814 482 CpG island CpG island 16688
Gm42986 5 129945580 to 129948964 3384 + unclassified gene predicted gene 42986
Gm43482 5 129964366 to 129966226 1860 + unclassified gene predicted gene 43482
Tssr49029 5 129978944 to 129978952 8 + TSS region transcription start site region 49029
Gusb 5 129989011 to 130003044 14033 - protein coding gene glucuronidase, beta
Tssr49030 5 129989019 to 129989040 21 + TSS region transcription start site region 49030
Tssr53503 5 129993587 to 129993601 14 - TSS region transcription start site region 53503
Tssr53504 5 129995488 to 129995510 22 - TSS region transcription start site region 53504
Cpgi16689 5 129997815 to 129998229 414 CpG island CpG island 16689
Tssr53505 5 129997854 to 129997866 12 - TSS region transcription start site region 53505
Tssr53506 5 129998119 to 129998134 15 - TSS region transcription start site region 53506
D5Mit27 5 130000063 to 130000203 140 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 27
Tssr53507 5 130000401 to 130000417 16 - TSS region transcription start site region 53507
Tssr53508 5 130000816 to 130000852 36 - TSS region transcription start site region 53508
Tssr53509 5 130000858 to 130000877 19 - TSS region transcription start site region 53509
Tssr53510 5 130000924 to 130000955 31 - TSS region transcription start site region 53510
Cpgi16690 5 130002431 to 130002944 513 CpG island CpG island 16690
Tssr53511 5 130002653 to 130002689 36 - TSS region transcription start site region 53511
Tssr53512 5 130002813 to 130002834 21 - TSS region transcription start site region 53512
Tssr53513 5 130002838 to 130002893 55 - TSS region transcription start site region 53513
Tssr53514 5 130003000 to 130003012 12 - TSS region transcription start site region 53514
Asl 5 130011498 to 130024331 12833 - protein coding gene argininosuccinate lyase
Tssr53515 5 130013439 to 130013473 34 - TSS region transcription start site region 53515
Tssr53516 5 130013992 to 130014032 40 - TSS region transcription start site region 53516
Cpgi16691 5 130016147 to 130016531 384 CpG island CpG island 16691
Tssr53517 5 130016827 to 130016833 6 - TSS region transcription start site region 53517
Tssr53518 5 130023228 to 130023233 5 - TSS region transcription start site region 53518
Cpgi16692 5 130023846 to 130024405 559 CpG island CpG island 16692
Tssr53519 5 130024280 to 130024357 77 - TSS region transcription start site region 53519
Gm40334 5 130025128 to 130028108 2980 - lncRNA gene predicted gene, 40334
Cpgi16693 5 130029153 to 130029712 559 CpG island CpG island 16693
Tssr49031 5 130029277 to 130029340 63 + TSS region transcription start site region 49031
Crcp 5 130029306 to 130060787 31481 + protein coding gene calcitonin gene-related peptide-receptor component protein
Tssr49032 5 130029345 to 130029378 33 + TSS region transcription start site region 49032
Tssr49033 5 130029385 to 130029396 11 + TSS region transcription start site region 49033
Tpst1 5 130073326 to 130135729 62403 + protein coding gene protein-tyrosine sulfotransferase 1
Cpgi16694 5 130078935 to 130080225 1290 CpG island CpG island 16694
Tssr49034 5 130079391 to 130079403 12 + TSS region transcription start site region 49034
Tssr49035 5 130079426 to 130079435 9 + TSS region transcription start site region 49035
Tssr49036 5 130079439 to 130079448 9 + TSS region transcription start site region 49036
Tssr49037 5 130079452 to 130079461 9 + TSS region transcription start site region 49037
Tssr49038 5 130079478 to 130079492 14 + TSS region transcription start site region 49038
Tssr53520 5 130081349 to 130081382 33 - TSS region transcription start site region 53520
2210412B16Rik 5 130131327 to 130131824 497 + unclassified gene RIKEN cDNA 2210412B16 gene
Cpgi16695 5 130144061 to 130145407 1346 CpG island CpG island 16695
Tssr53521 5 130144470 to 130144491 21 - TSS region transcription start site region 53521
Kctd7 5 130144861 to 130155806 10945 + protein coding gene potassium channel tetramerisation domain containing 7
Tssr49039 5 130144872 to 130144937 65 + TSS region transcription start site region 49039
Tssr49040 5 130145065 to 130145083 18 + TSS region transcription start site region 49040
Tssr49041 5 130145102 to 130145125 23 + TSS region transcription start site region 49041
Cpgi16696 5 130171358 to 130172583 1225 CpG island CpG island 16696
Tssr53522 5 130171541 to 130171568 27 - TSS region transcription start site region 53522
Tssr53523 5 130171570 to 130171590 20 - TSS region transcription start site region 53523
Tssr53524 5 130171724 to 130171748 24 - TSS region transcription start site region 53524
Rabgef1 5 130171798 to 130214342 42544 + protein coding gene RAB guanine nucleotide exchange factor (GEF) 1
Tssr49042 5 130171813 to 130171879 66 + TSS region transcription start site region 49042
Tssr53525 5 130172348 to 130172362 14 - TSS region transcription start site region 53525
Tssr53526 5 130172410 to 130172440 30 - TSS region transcription start site region 53526
Tssr53527 5 130172462 to 130172471 9 - TSS region transcription start site region 53527
Tssr53528 5 130172573 to 130172585 12 - TSS region transcription start site region 53528
Tssr53529 5 130172596 to 130172606 10 - TSS region transcription start site region 53529
Tssr49043 5 130187158 to 130187166 8 + TSS region transcription start site region 49043
Tssr49044 5 130187189 to 130187203 14 + TSS region transcription start site region 49044
Gm15920 5 130188395 to 130188796 401 + pseudogene predicted gene 15920
Tssr49045 5 130188423 to 130188425 2 + TSS region transcription start site region 49045
Tssr49046 5 130204931 to 130204938 7 + TSS region transcription start site region 49046
Gm15921 5 130208080 to 130208562 482 - pseudogene predicted gene 15921
Tssr1647 5 130213742 to 130213746 4 + TSS region transcription start site region 1647
Tssr49047 5 130219534 to 130219549 15 + TSS region transcription start site region 49047
Tssr49048 5 130219706 to 130219720 14 + TSS region transcription start site region 49048
Tmem248 5 130219744 to 130243765 24021 + protein coding gene transmembrane protein 248
Gm6598 5 130220451 to 130223063 2612 - antisense lncRNA gene predicted gene 6598
Cpgi16697 5 130221898 to 130222930 1032 CpG island CpG island 16697
Tssr53530 5 130222216 to 130222233 17 - TSS region transcription start site region 53530
Tssr49049 5 130222302 to 130222316 14 + TSS region transcription start site region 49049
Tssr49050 5 130222328 to 130222390 62 + TSS region transcription start site region 49050
Tssr49051 5 130222391 to 130222403 12 + TSS region transcription start site region 49051
Tssr49052 5 130222410 to 130222425 15 + TSS region transcription start site region 49052
Tssr49053 5 130223913 to 130223929 16 + TSS region transcription start site region 49053
Tssr1648 5 130224163 to 130224169 6 + TSS region transcription start site region 1648
Gm42467 5 130226216 to 130227662 1446 + unclassified gene predicted gene 42467
Tssr49054 5 130242157 to 130242160 3 + TSS region transcription start site region 49054
Sbds 5 130245731 to 130255530 9799 - protein coding gene SBDS ribosome maturation factor
Tssr53531 5 130245944 to 130245949 5 - TSS region transcription start site region 53531
Tssr53532 5 130248048 to 130248052 4 - TSS region transcription start site region 53532
Tssr53533 5 130250882 to 130250899 17 - TSS region transcription start site region 53533
Tssr53534 5 130254248 to 130254252 4 - TSS region transcription start site region 53534
Tssr53535 5 130254376 to 130254431 55 - TSS region transcription start site region 53535
Cpgi16698 5 130255022 to 130255699 677 CpG island CpG island 16698
Tssr53536 5 130255330 to 130255339 9 - TSS region transcription start site region 53536
Tssr53537 5 130255343 to 130255378 35 - TSS region transcription start site region 53537
Tssr53538 5 130255380 to 130255391 11 - TSS region transcription start site region 53538
Tssr53539 5 130255394 to 130255399 5 - TSS region transcription start site region 53539
Tssr53540 5 130255409 to 130255418 9 - TSS region transcription start site region 53540
Tssr53541 5 130255422 to 130255509 87 - TSS region transcription start site region 53541
Tssr53542 5 130255525 to 130255537 12 - TSS region transcription start site region 53542
Tssr49055 5 130255590 to 130255630 40 + TSS region transcription start site region 49055
Tyw1 5 130255619 to 130341563 85944 + protein coding gene tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)
Tssr53543 5 130256804 to 130256809 5 - TSS region transcription start site region 53543
Cpgi16699 5 130256840 to 130257218 378 CpG island CpG island 16699
Tssr49056 5 130257029 to 130257072 43 + TSS region transcription start site region 49056
Tssr49057 5 130280942 to 130280952 10 + TSS region transcription start site region 49057
D5Mit245 5 130300108 to 130300252 144 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 245
Tssr49058 5 130369247 to 130369289 42 + TSS region transcription start site region 49058
Caln1 5 130369356 to 130846325 476969 + protein coding gene calneuron 1
Cpgi16700 5 130369372 to 130369581 209 CpG island CpG island 16700
Tssr49059 5 130369407 to 130369417 10 + TSS region transcription start site region 49059
Tssr49060 5 130369420 to 130369474 54 + TSS region transcription start site region 49060
Tssr49061 5 130369481 to 130369495 14 + TSS region transcription start site region 49061
Tssr49062 5 130369522 to 130369525 3 + TSS region transcription start site region 49062
Gm40336 5 130372153 to 130378507 6354 - lncRNA gene predicted gene, 40336
A330070K13Rik 5 130378851 to 130384631 5780 - protein coding gene RIKEN cDNA A330070K13 gene