Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:128801596-129813013

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102 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lprq4 5 113883692 to 129555542 15671850 QTL lipoprotein QTL 4
Rimbp2 5 128757791 to 128953486 195695 - protein coding gene RIMS binding protein 2
Tssr48988 5 128814349 to 128814350 1 + TSS region transcription start site region 48988
Gm34057 5 128817927 to 128821701 3774 + lncRNA gene predicted gene, 34057
Tssr53472 5 128819892 to 128819928 36 - TSS region transcription start site region 53472
Tssr53473 5 128820053 to 128820082 29 - TSS region transcription start site region 53473
Tssr53474 5 128904252 to 128904266 14 - TSS region transcription start site region 53474
Cpgi16667 5 128952216 to 128952914 698 CpG island CpG island 16667
Tssr53475 5 128953047 to 128953066 19 - TSS region transcription start site region 53475
Tssr53476 5 128953303 to 128953331 28 - TSS region transcription start site region 53476
D5Mit243 5 128979164 to 128979312 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 243
Stx2 5 128984557 to 129008574 24017 - protein coding gene syntaxin 2
Tssr53477 5 128989921 to 128989935 14 - TSS region transcription start site region 53477
Tssr53478 5 129002708 to 129002737 29 - TSS region transcription start site region 53478
Tssr53479 5 129007523 to 129007526 3 - TSS region transcription start site region 53479
Cpgi16668 5 129007784 to 129008826 1042 CpG island CpG island 16668
Tssr53480 5 129008494 to 129008537 43 - TSS region transcription start site region 53480
Tssr53481 5 129008546 to 129008596 50 - TSS region transcription start site region 53481
Cpgi16669 5 129019388 to 129021093 1705 CpG island CpG island 16669
Tssr48989 5 129019727 to 129019761 34 + TSS region transcription start site region 48989
Ran 5 129020156 to 129024322 4166 + protein coding gene RAN, member RAS oncogene family
Tssr48990 5 129020193 to 129020253 60 + TSS region transcription start site region 48990
Tssr48991 5 129020433 to 129020440 7 + TSS region transcription start site region 48991
Tssr48992 5 129020459 to 129020501 42 + TSS region transcription start site region 48992
Tssr48993 5 129020504 to 129020523 19 + TSS region transcription start site region 48993
Tssr48994 5 129020691 to 129020711 20 + TSS region transcription start site region 48994
Gm38615 5 129063578 to 129068908 5330 + lncRNA gene predicted gene, 38615
Tssr48995 5 129096655 to 129096671 16 + TSS region transcription start site region 48995
Tssr48996 5 129096716 to 129096726 10 + TSS region transcription start site region 48996
Tssr48997 5 129096740 to 129096771 31 + TSS region transcription start site region 48997
Adgrd1 5 129096750 to 129204599 107849 + protein coding gene adhesion G protein-coupled receptor D1
Tssr48998 5 129096780 to 129096800 20 + TSS region transcription start site region 48998
Cpgi16670 5 129111533 to 129111714 181 CpG island CpG island 16670
Gm46923 5 129113378 to 129117899 4521 - lncRNA gene predicted gene, 46923
Tssr48999 5 129114998 to 129115014 16 + TSS region transcription start site region 48999
Tssr53482 5 129116608 to 129116622 14 - TSS region transcription start site region 53482
Rps16-ps2 5 129128077 to 129128517 440 - pseudogene ribosomal protein S16, pseudogene 2
Tssr53483 5 129128563 to 129128575 12 - TSS region transcription start site region 53483
D5Mit163 5 129139863 to 129140004 141 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 163
Tssr49000 5 129160758 to 129160761 3 + TSS region transcription start site region 49000
Tssr49001 5 129174275 to 129174322 47 + TSS region transcription start site region 49001
Tssr49002 5 129204327 to 129204332 5 + TSS region transcription start site region 49002
D5Mit427 5 129212105 to 129212215 110 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 427
Tssr49003 5 129234182 to 129234186 4 + TSS region transcription start site region 49003
Tssr49004 5 129235034 to 129235038 4 + TSS region transcription start site region 49004
D5Mit339 5 129242998 to 129243112 114 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 339
Cpgi16671 5 129264498 to 129264667 169 CpG island CpG island 16671
Gm34145 5 129306596 to 129308013 1417 - lncRNA gene predicted gene, 34145
Tssr49005 5 129363543 to 129363581 38 + TSS region transcription start site region 49005
Gm43001 5 129363562 to 129364721 1159 + lincRNA gene predicted gene 43001
Gm34468 5 129493231 to 129497417 4186 + lncRNA gene predicted gene, 34468
Gm40333 5 129493873 to 129494379 506 - lncRNA gene predicted gene, 40333
Gm40332 5 129500250 to 129501163 913 - lncRNA gene predicted gene, 40332
Cpgi16672 5 129500747 to 129502293 1546 CpG island CpG island 16672
Tssr49006 5 129501223 to 129501253 30 + TSS region transcription start site region 49006
Sfswap 5 129501231 to 129571384 70153 + protein coding gene splicing factor SWAP
Tssr49007 5 129511179 to 129511182 3 + TSS region transcription start site region 49007
D5Mit30 5 129555399 to 129555542 143 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 30
Gm42979 5 129556147 to 129558374 2227 + unclassified gene predicted gene 42979
Cpgi16673 5 129583533 to 129585598 2065 CpG island CpG island 16673
Mmp17 5 129584169 to 129611099 26930 + protein coding gene matrix metallopeptidase 17
Tssr49008 5 129584173 to 129584232 59 + TSS region transcription start site region 49008
Cpgi16674 5 129586268 to 129586606 338 CpG island CpG island 16674
Gm6139 5 129622990 to 129623871 881 - pseudogene predicted gene 6139
Gm18390 5 129634262 to 129640299 6037 + pseudogene predicted gene, 18390
Zfp11 5 129654595 to 129670088 15493 - protein coding gene zinc finger protein 11
Cpgi16675 5 129669793 to 129670425 632 CpG island CpG island 16675
Tssr53484 5 129670050 to 129670062 12 - TSS region transcription start site region 53484
Tssr53485 5 129670074 to 129670100 26 - TSS region transcription start site region 53485
Tssr53486 5 129670103 to 129670115 12 - TSS region transcription start site region 53486
Tssr53487 5 129682320 to 129682323 3 - TSS region transcription start site region 53487
Sept14 5 129683391 to 129708511 25120 - protein coding gene septin 14
Tssr1646 5 129704950 to 129704953 3 - TSS region transcription start site region 1646
Tssr53488 5 129704964 to 129704989 25 - TSS region transcription start site region 53488
Cpgi16676 5 129715362 to 129715850 488 CpG island CpG island 16676
Mrps17 5 129715441 to 129718712 3271 + protein coding gene mitochondrial ribosomal protein S17
Tssr49009 5 129715488 to 129715539 51 + TSS region transcription start site region 49009
Cpgi16677 5 129724735 to 129725959 1224 CpG island CpG island 16677
Nipsnap2 5 129725063 to 129758327 33264 + protein coding gene nipsnap homolog 2
Tssr49010 5 129725081 to 129725143 62 + TSS region transcription start site region 49010
Tssr49011 5 129727043 to 129727055 12 + TSS region transcription start site region 49011
Gm15903 5 129727046 to 129731689 4643 + sense intronic lncRNA gene predicted gene 15903
Cpgi16678 5 129730375 to 129730548 173 CpG island CpG island 16678
Tssr49012 5 129747017 to 129747037 20 + TSS region transcription start site region 49012
Tssr49013 5 129755681 to 129755715 34 + TSS region transcription start site region 49013
Tssr49014 5 129757631 to 129757635 4 + TSS region transcription start site region 49014
Psph 5 129765558 to 129787253 21695 - protein coding gene phosphoserine phosphatase
Cpgi16679 5 129778858 to 129779440 582 CpG island CpG island 16679
Tssr53489 5 129779119 to 129779131 12 - TSS region transcription start site region 53489
Tssr53490 5 129779175 to 129779186 11 - TSS region transcription start site region 53490
Tssr53491 5 129779204 to 129779283 79 - TSS region transcription start site region 53491
Cpgi16680 5 129786969 to 129787811 842 CpG island CpG island 16680
Tssr49015 5 129786990 to 129787058 68 + TSS region transcription start site region 49015
Tssr53492 5 129787158 to 129787173 15 - TSS region transcription start site region 53492
Tssr53493 5 129787175 to 129787259 84 - TSS region transcription start site region 53493
Cct6a 5 129787356 to 129846443 59087 + protein coding gene chaperonin containing Tcp1, subunit 6a (zeta)
Tssr49016 5 129787365 to 129787388 23 + TSS region transcription start site region 49016
Tssr49017 5 129787390 to 129787413 23 + TSS region transcription start site region 49017
Gm23245 5 129789539 to 129789673 134 + snoRNA gene predicted gene, 23245
Tssr49018 5 129791800 to 129791812 12 + TSS region transcription start site region 49018
Tssr49019 5 129794350 to 129794369 19 + TSS region transcription start site region 49019
Snora15 5 129794561 to 129794676 115 + snoRNA gene small nucleolar RNA, H/ACA box 15