Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:128657791-129053486

42 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Cpgi16664	5	128667772 to 128668104	332		CpG island	CpG island 16664
Gm33995	5	128705420 to 128709399	3979	-	lncRNA gene	predicted gene, 33995
Tssr1643	5	128717447 to 128717450	3	+	TSS region	transcription start site region 1643
4930553I04Rik	5	128735360 to 128736029	669	-	unclassified gene	RIKEN cDNA 4930553I04 gene
Cpgi16665	5	128735848 to 128736402	554		CpG island	CpG island 16665
Tssr53471	5	128736011 to 128736018	7	-	TSS region	transcription start site region 53471
Piwil1	5	128736070 to 128755474	19404	+	protein coding gene	piwi-like RNA-mediated gene silencing 1
Tssr48983	5	128736086 to 128736093	7	+	TSS region	transcription start site region 48983
Tssr48984	5	128736125 to 128736132	7	+	TSS region	transcription start site region 48984
Tssr1644	5	128736160 to 128736161	1	+	TSS region	transcription start site region 1644
Tssr48985	5	128736168 to 128736187	19	+	TSS region	transcription start site region 48985
Tssr48986	5	128736242 to 128736247	5	+	TSS region	transcription start site region 48986
Tssr48987	5	128755127 to 128755143	16	+	TSS region	transcription start site region 48987
Tssr1645	5	128757303 to 128757309	6	+	TSS region	transcription start site region 1645
Rimbp2	5	128757791 to 128953486	195695	-	protein coding gene	RIMS binding protein 2
Gm42875	5	128769524 to 128777837	8313	+	antisense lncRNA gene	predicted gene 42875
Gm42871	5	128774525 to 128775550	1025	-	sense intronic lncRNA gene	predicted gene 42871
Cpgi16666	5	128781710 to 128782378	668		CpG island	CpG island 16666
Tssr48988	5	128814349 to 128814350	1	+	TSS region	transcription start site region 48988
Gm34057	5	128817927 to 128821701	3774	+	lncRNA gene	predicted gene, 34057
Tssr53472	5	128819892 to 128819928	36	-	TSS region	transcription start site region 53472
Tssr53473	5	128820053 to 128820082	29	-	TSS region	transcription start site region 53473
Tssr53474	5	128904252 to 128904266	14	-	TSS region	transcription start site region 53474
Cpgi16667	5	128952216 to 128952914	698		CpG island	CpG island 16667
Tssr53475	5	128953047 to 128953066	19	-	TSS region	transcription start site region 53475
Tssr53476	5	128953303 to 128953331	28	-	TSS region	transcription start site region 53476
D5Mit243	5	128979164 to 128979312	148		DNA segment	DNA segment, Chr 5, Massachusetts Institute of Technology 243
Stx2	5	128984557 to 129008574	24017	-	protein coding gene	syntaxin 2
Tssr53477	5	128989921 to 128989935	14	-	TSS region	transcription start site region 53477
Tssr53478	5	129002708 to 129002737	29	-	TSS region	transcription start site region 53478
Tssr53479	5	129007523 to 129007526	3	-	TSS region	transcription start site region 53479
Cpgi16668	5	129007784 to 129008826	1042		CpG island	CpG island 16668
Tssr53480	5	129008494 to 129008537	43	-	TSS region	transcription start site region 53480
Tssr53481	5	129008546 to 129008596	50	-	TSS region	transcription start site region 53481
Cpgi16669	5	129019388 to 129021093	1705		CpG island	CpG island 16669
Tssr48989	5	129019727 to 129019761	34	+	TSS region	transcription start site region 48989
Ran	5	129020156 to 129024322	4166	+	protein coding gene	RAN, member RAS oncogene family
Tssr48990	5	129020193 to 129020253	60	+	TSS region	transcription start site region 48990
Tssr48991	5	129020433 to 129020440	7	+	TSS region	transcription start site region 48991
Tssr48992	5	129020459 to 129020501	42	+	TSS region	transcription start site region 48992
Tssr48993	5	129020504 to 129020523	19	+	TSS region	transcription start site region 48993
Tssr48994	5	129020691 to 129020711	20	+	TSS region	transcription start site region 48994