Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:12585414-14142565

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sema3d 5 12383385 to 12588948 205563 + protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D
Gm42580 5 12669155 to 12670728 1573 - pseudogene predicted gene 42580
Tssr1422 5 12719662 to 12719696 34 + TSS region transcription start site region 1422
Tssr45173 5 12719819 to 12719867 48 + TSS region transcription start site region 45173
Cpgi15548 5 12928834 to 12929155 321 CpG island CpG island 15548
Gm23243 5 12940370 to 12940479 109 + miRNA gene predicted gene, 23243
Gm10481 5 13042433 to 13043434 1001 - pseudogene predicted gene 10481
Gm6641 5 13080828 to 13082142 1314 + pseudogene predicted gene 6641
Gm10108 5 13121448 to 13121766 318 - pseudogene predicted pseudogene 10108
Sema3a 5 13125414 to 13602565 477151 + protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
Tssr45174 5 13125458 to 13125470 12 + TSS region transcription start site region 45174
Tssr45175 5 13125474 to 13125512 38 + TSS region transcription start site region 45175
Tssr45176 5 13125513 to 13125537 24 + TSS region transcription start site region 45176
Tssr45177 5 13125558 to 13125575 17 + TSS region transcription start site region 45177
Tssr45178 5 13125585 to 13125610 25 + TSS region transcription start site region 45178
Tssr45179 5 13125613 to 13125635 22 + TSS region transcription start site region 45179
Gm42680 5 13133459 to 13135958 2499 - unclassified gene predicted gene 42680
Tssr45180 5 13398680 to 13398696 16 + TSS region transcription start site region 45180
Tssr45181 5 13398704 to 13398726 22 + TSS region transcription start site region 45181
Tssr45182 5 13398828 to 13398871 43 + TSS region transcription start site region 45182
Cpgi15549 5 13398978 to 13399582 604 CpG island CpG island 15549
Tssr45183 5 13399325 to 13399382 57 + TSS region transcription start site region 45183
Tssr45184 5 13399387 to 13399415 28 + TSS region transcription start site region 45184
Tssr45185 5 13399495 to 13399519 24 + TSS region transcription start site region 45185
Tssr45186 5 13399751 to 13399765 14 + TSS region transcription start site region 45186
Gm43130 5 13481028 to 13484934 3906 + unclassified gene predicted gene 43130
Gm42676 5 13525723 to 13528408 2685 + unclassified gene predicted gene 42676
Gm42675 5 13548694 to 13552728 4034 + unclassified gene predicted gene 42675
Tssr1423 5 13587486 to 13587489 3 + TSS region transcription start site region 1423
Gm43719 5 13604035 to 13606233 2198 + unclassified gene predicted gene 43719
Gm43718 5 13615959 to 13617815 1856 - unclassified gene predicted gene 43718
Gm4751 5 13763618 to 13764722 1104 + pseudogene predicted gene 4751
Gm6647 5 13768662 to 13771887 3225 + pseudogene predicted gene 6647
4930568A13Rik 5 13774326 to 13808284 33958 - lincRNA gene RIKEN cDNA 4930568A13 gene
Speer3 5 13791619 to 13796819 5200 + protein coding gene spermatogenesis associated glutamate (E)-rich protein 3
Gm6650 5 13811242 to 13814452 3210 + pseudogene predicted gene 6650
Gm8968 5 13838233 to 13839535 1302 - pseudogene predicted gene 8968
Gm35702 5 13877166 to 13877676 510 + pseudogene predicted gene, 35702
Dnd1-ps 5 13879219 to 13880182 963 + pseudogene DND microRNA-mediated repression inhibitor 1, pseudogene
Cpgi15550 5 13879369 to 13879723 354 CpG island CpG island 15550
Gm24054 5 13902770 to 13902874 104 - miRNA gene predicted gene, 24054
Cpgi15551 5 14025162 to 14025768 606 CpG island CpG island 15551
Tssr45187 5 14025267 to 14025291 24 + TSS region transcription start site region 45187
Sema3e 5 14025276 to 14256689 231413 + protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E
Tssr45188 5 14025305 to 14025327 22 + TSS region transcription start site region 45188
Tssr45189 5 14025338 to 14025373 35 + TSS region transcription start site region 45189
Tssr45190 5 14025416 to 14025472 56 + TSS region transcription start site region 45190
Tssr45191 5 14025474 to 14025488 14 + TSS region transcription start site region 45191
Tssr45192 5 14025593 to 14025604 11 + TSS region transcription start site region 45192
Tssr45193 5 14025609 to 14025625 16 + TSS region transcription start site region 45193
Gm43519 5 14027894 to 14029765 1871 + unclassified gene predicted gene 43519
Tssr45194 5 14027915 to 14027920 5 + TSS region transcription start site region 45194
Tssr45195 5 14032733 to 14032734 1 + TSS region transcription start site region 45195
Gm4128 5 14056438 to 14074157 17719 - antisense lncRNA gene predicted gene 4128