Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:125633875-127393981

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vng 5 104239005 to 126924008 22685003 heritable phenotypic marker van gogh
Hmtb4 5 108614643 to 126805880 18191237 QTL hemostasis and thrombosis rebleeding time 4
Tmem132b 5 125532418 to 125792583 260165 + protein coding gene transmembrane protein 132B
Gm32811 5 125761766 to 125767311 5545 - lncRNA gene predicted gene, 32811
Tssr1640 5 125766433 to 125766447 14 - TSS region transcription start site region 1640
Gm40327 5 125816735 to 125838104 21369 - lncRNA gene predicted gene, 40327
Gm4868 5 125847952 to 125848740 788 - pseudogene predicted gene 4868
Tssr53456 5 125849882 to 125849893 11 - TSS region transcription start site region 53456
Tssr53457 5 125849897 to 125849904 7 - TSS region transcription start site region 53457
Tssr48950 5 125850002 to 125850008 6 + TSS region transcription start site region 48950
Tssr48951 5 125850012 to 125850031 19 + TSS region transcription start site region 48951
Gm40328 5 125860001 to 125861873 1872 - lncRNA gene predicted gene, 40328
Gm32986 5 125911841 to 125926799 14958 - lncRNA gene predicted gene, 32986
Cpgi16650 5 125920011 to 125920413 402 CpG island CpG island 16650
Tssr48952 5 125928765 to 125928779 14 + TSS region transcription start site region 48952
1700048F04Rik 5 125928770 to 125952630 23860 + lincRNA gene RIKEN cDNA 1700048F04 gene
Gm42945 5 125958409 to 125965845 7436 - lincRNA gene predicted gene 42945
Gm42952 5 125963530 to 125988428 24898 + lincRNA gene predicted gene 42952
Gm7774 5 126025941 to 126026473 532 - pseudogene predicted gene 7774
Cpgi16651 5 126026190 to 126026452 262 CpG island CpG island 16651
Gm40329 5 126041188 to 126044008 2820 + lncRNA gene predicted gene, 40329
D5Mit214 5 126090176 to 126090317 141 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 214
Bbaa25 5 126090176 to 126090317 141 QTL B.burgdorferi-associated arthritis 25
Ahl21 5 126090176 to 126090317 141 QTL age related hearing loss, early onset 21
Xiaf2 5 126090176 to 144640558 18550382 heritable phenotypic marker X inactivation autosomal factor 2
D5Mit291 5 126214846 to 126214983 137 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 291
D5Mit213 5 126362284 to 126362395 111 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 213
Bwefm 5 126362284 to 126362395 111 QTL body weight females and males day 10
Gm23151 5 126389548 to 126389654 106 - snRNA gene predicted gene, 23151
Gm37700 5 126448458 to 126449422 964 + unclassified gene predicted gene, 37700
Gm40330 5 126503850 to 126504975 1125 - lincRNA gene predicted gene, 40330
Tssr53458 5 126504958 to 126504966 8 - TSS region transcription start site region 53458
Tssr53459 5 126504971 to 126504979 8 - TSS region transcription start site region 53459
Gm24839 5 126513875 to 126513981 106 - snRNA gene predicted gene, 24839
Gm33239 5 126694279 to 126706598 12319 + lncRNA gene predicted gene, 33239
1700081B01Rik 5 126706914 to 126736252 29338 + lincRNA gene RIKEN cDNA 1700081B01 gene
Gm33347 5 126724326 to 126727284 2958 - lincRNA gene predicted gene, 33347
Tssr53460 5 126727275 to 126727300 25 - TSS region transcription start site region 53460
D5Mit189 5 126730335 to 126730479 144 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 189
D5Mit370 5 126786591 to 126786711 120 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 370
Gm42953 5 126797255 to 126815482 18227 - lincRNA gene predicted gene 42953
D5Mit320 5 126805757 to 126805880 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 320
Hmtb5 5 126805880 to 99801563 -27004317 QTL hemostasis and thrombosis bleeding time 5
Gm40331 5 126852757 to 126885316 32559 + lincRNA gene predicted gene, 40331
D5Mit174 5 126890472 to 126890611 139 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 174
D5Mit161 5 126923890 to 126924008 118 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 161
Tmc1m4 5 126924008 to 54342835 -72581173 QTL Tmc1 modifier 4
D5Mit140 5 126948601 to 126948719 118 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 140
Gm42955 5 127020227 to 127023619 3392 + unclassified gene predicted gene 42955
Tssr48953 5 127027372 to 127027379 7 + TSS region transcription start site region 48953
Tssr48954 5 127027381 to 127027388 7 + TSS region transcription start site region 48954
Tssr48955 5 127027389 to 127027399 10 + TSS region transcription start site region 48955
4933438B17Rik 5 127030789 to 127088529 57740 + lincRNA gene RIKEN cDNA 4933438B17 gene
Tssr48956 5 127030806 to 127030821 15 + TSS region transcription start site region 48956
Tssr48957 5 127030823 to 127030834 11 + TSS region transcription start site region 48957
Gm33491 5 127070093 to 127107436 37343 - lncRNA gene predicted gene, 33491
Gm43475 5 127108069 to 127108856 787 + lincRNA gene predicted gene 43475
D5Ertd159e 5 127113266 to 127113493 227 DNA segment DNA segment, Chr 5, ERATO Doi 159, expressed
D5Mit289 5 127168862 to 127169207 345 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 289
Tssr48958 5 127170549 to 127170579 30 + TSS region transcription start site region 48958
4930572K03Rik 5 127170565 to 127184356 13791 + lincRNA gene RIKEN cDNA 4930572K03 gene
Gm43476 5 127200693 to 127201097 404 - lincRNA gene predicted gene 43476
4930548G05Rik 5 127202362 to 127230534 28172 - lncRNA gene RIKEN cDNA 4930548G05 gene
Cpgi16652 5 127241267 to 127243319 2052 CpG island CpG island 16652
Tssr48959 5 127241785 to 127241798 13 + TSS region transcription start site region 48959
Tssr48960 5 127241807 to 127241849 42 + TSS region transcription start site region 48960
Tmem132c 5 127241826 to 127565790 323964 + protein coding gene transmembrane protein 132C
Cpgi16653 5 127243321 to 127243820 499 CpG island CpG island 16653
Tssr48961 5 127245146 to 127245153 7 + TSS region transcription start site region 48961
Tmem132cos 5 127256860 to 127281623 24763 - antisense lncRNA gene transmembrane protein 132C, opposite strand
Tssr48962 5 127257164 to 127257166 2 + TSS region transcription start site region 48962
Tssr53461 5 127281572 to 127281608 36 - TSS region transcription start site region 53461
Tssr53462 5 127281620 to 127281627 7 - TSS region transcription start site region 53462
D5Mit212 5 127299938 to 127300059 121 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 212
Tssr48963 5 127302607 to 127302611 4 + TSS region transcription start site region 48963
9430087B13Rik 5 127309017 to 127310101 1084 + unclassified gene RIKEN cDNA 9430087B13 gene