Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:125511433-126021447

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26 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aacs 5 125475873 to 125517403 41530 + protein coding gene acetoacetyl-CoA synthetase
Cpgi16648 5 125531593 to 125533440 1847 CpG island CpG island 16648
Tssr48945 5 125531787 to 125531819 32 + TSS region transcription start site region 48945
Tssr48946 5 125532377 to 125532393 16 + TSS region transcription start site region 48946
Tssr48947 5 125532403 to 125532419 16 + TSS region transcription start site region 48947
Tmem132b 5 125532418 to 125792583 260165 + protein coding gene transmembrane protein 132B
Tssr1639 5 125532531 to 125532538 7 + TSS region transcription start site region 1639
Tssr48948 5 125532541 to 125532544 3 + TSS region transcription start site region 48948
Cpgi16649 5 125534591 to 125534844 253 CpG island CpG island 16649
Tssr48949 5 125555437 to 125555439 2 + TSS region transcription start site region 48949
Tssr53455 5 125589030 to 125589039 9 - TSS region transcription start site region 53455
Gm32811 5 125761766 to 125767311 5545 - lncRNA gene predicted gene, 32811
Tssr1640 5 125766433 to 125766447 14 - TSS region transcription start site region 1640
Gm40327 5 125816735 to 125838104 21369 - lncRNA gene predicted gene, 40327
Gm4868 5 125847952 to 125848740 788 - pseudogene predicted gene 4868
Tssr53456 5 125849882 to 125849893 11 - TSS region transcription start site region 53456
Tssr53457 5 125849897 to 125849904 7 - TSS region transcription start site region 53457
Tssr48950 5 125850002 to 125850008 6 + TSS region transcription start site region 48950
Tssr48951 5 125850012 to 125850031 19 + TSS region transcription start site region 48951
Gm40328 5 125860001 to 125861873 1872 - lncRNA gene predicted gene, 40328
Gm32986 5 125911841 to 125926799 14958 - lncRNA gene predicted gene, 32986
Cpgi16650 5 125920011 to 125920413 402 CpG island CpG island 16650
Tssr48952 5 125928765 to 125928779 14 + TSS region transcription start site region 48952
1700048F04Rik 5 125928770 to 125952630 23860 + lincRNA gene RIKEN cDNA 1700048F04 gene
Gm42945 5 125958409 to 125965845 7436 - lincRNA gene predicted gene 42945
Gm42952 5 125963530 to 125988428 24898 + lincRNA gene predicted gene 42952