Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:125313875-127713981

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180 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vng 5 104239005 to 126924008 22685003 heritable phenotypic marker van gogh
Hmtb4 5 108614643 to 126805880 18191237 QTL hemostasis and thrombosis rebleeding time 4
oar 5 119880432 to 125451502 5571070 heritable phenotypic marker oarleg
Scarb1 5 125277087 to 125341094 64007 - protein coding gene scavenger receptor class B, member 1
Gm42633 5 125318681 to 125321444 2763 - unclassified gene predicted gene 42633
Tssr53432 5 125326335 to 125326385 50 - TSS region transcription start site region 53432
Tssr53433 5 125327691 to 125327740 49 - TSS region transcription start site region 53433
Cpgi16640 5 125340253 to 125341420 1167 CpG island CpG island 16640
Tssr53434 5 125341011 to 125341027 16 - TSS region transcription start site region 53434
Tssr53435 5 125341043 to 125341112 69 - TSS region transcription start site region 53435
Gm40323 5 125361175 to 125370760 9585 + lincRNA gene predicted gene, 40323
D5Mit426 5 125369034 to 125369154 120 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 426
Gm40324 5 125374816 to 125379769 4953 + lncRNA gene predicted gene, 40324
Ubc 5 125385965 to 125390017 4052 - protein coding gene ubiquitin C
Tssr48925 5 125385976 to 125385979 3 + TSS region transcription start site region 48925
Tssr53436 5 125388869 to 125388872 3 - TSS region transcription start site region 53436
Cpgi16641 5 125389089 to 125390292 1203 CpG island CpG island 16641
Tssr53437 5 125389150 to 125389170 20 - TSS region transcription start site region 53437
Tssr53438 5 125389177 to 125389208 31 - TSS region transcription start site region 53438
Tssr53439 5 125389215 to 125389222 7 - TSS region transcription start site region 53439
Tssr48926 5 125389268 to 125389273 5 + TSS region transcription start site region 48926
Tssr48927 5 125389284 to 125389327 43 + TSS region transcription start site region 48927
Gm10382 5 125389322 to 125390554 1232 + protein coding gene predicted gene 10382
Tssr48928 5 125389328 to 125389339 11 + TSS region transcription start site region 48928
Tssr48929 5 125389340 to 125389357 17 + TSS region transcription start site region 48929
Tssr48930 5 125389486 to 125389493 7 + TSS region transcription start site region 48930
Tssr53440 5 125389555 to 125389583 28 - TSS region transcription start site region 53440
Tssr53441 5 125389751 to 125389756 5 - TSS region transcription start site region 53441
Tssr1638 5 125389844 to 125389869 25 + TSS region transcription start site region 1638
Tssr53442 5 125389915 to 125390055 140 - TSS region transcription start site region 53442
Tssr53443 5 125390101 to 125390114 13 - TSS region transcription start site region 53443
Tssr53444 5 125390176 to 125390222 46 - TSS region transcription start site region 53444
Tssr48931 5 125390371 to 125390407 36 + TSS region transcription start site region 48931
Tssr53445 5 125391681 to 125391718 37 - TSS region transcription start site region 53445
Tssr53446 5 125391731 to 125391750 19 - TSS region transcription start site region 53446
Tssr48932 5 125391846 to 125391878 32 + TSS region transcription start site region 48932
Tssr53447 5 125392258 to 125392275 17 - TSS region transcription start site region 53447
Tssr53448 5 125392946 to 125392955 9 - TSS region transcription start site region 53448
Tssr53449 5 125392958 to 125392975 17 - TSS region transcription start site region 53449
Tssr53450 5 125392995 to 125393015 20 - TSS region transcription start site region 53450
Tssr53451 5 125393050 to 125393066 16 - TSS region transcription start site region 53451
Tssr53452 5 125393313 to 125393321 8 - TSS region transcription start site region 53452
Tssr53453 5 125393325 to 125393339 14 - TSS region transcription start site region 53453
Tssr48933 5 125393430 to 125393454 24 + TSS region transcription start site region 48933
Tssr48934 5 125394433 to 125394449 16 + TSS region transcription start site region 48934
Cpgi16642 5 125402776 to 125402932 156 CpG island CpG island 16642
n-TAtgc10 5 125404250 to 125404321 71 - tRNA gene nuclear encoded tRNA alanine 10 (anticodon TGC)
Cpgi16643 5 125405152 to 125405519 367 CpG island CpG island 16643
n-TDgtc15 5 125405607 to 125405678 71 - tRNA gene nuclear encoded tRNA aspartic acid 15 (anticodon GTC)
n-TFgaa7 5 125406055 to 125406127 72 - tRNA gene nuclear encoded tRNA pheylalanine 7 (anticodon GAA)
n-TDgtc14 5 125409016 to 125409087 71 - tRNA gene nuclear encoded tRNA aspartic acid 14 (anticodon GTC)
n-TAtgc5 5 125409472 to 125409543 71 + tRNA gene nuclear encoded tRNA alanine 5 (anticodon TGC)
Dhx37 5 125413858 to 125434121 20263 - protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 37
Cpgi16644 5 125433587 to 125434326 739 CpG island CpG island 16644
Tssr53454 5 125434053 to 125434131 78 - TSS region transcription start site region 53454
Gm43752 5 125435075 to 125435771 696 + pseudogene predicted gene 43752
Cpgi16645 5 125441273 to 125442351 1078 CpG island CpG island 16645
Tssr48935 5 125441546 to 125441614 68 + TSS region transcription start site region 48935
Bri3bp 5 125441568 to 125460370 18802 + protein coding gene Bri3 binding protein
Tssr48936 5 125441618 to 125441667 49 + TSS region transcription start site region 48936
Tssr48937 5 125441673 to 125441674 1 + TSS region transcription start site region 48937
Tssr48938 5 125442111 to 125442123 12 + TSS region transcription start site region 48938
D5Mit139 5 125451321 to 125451502 181 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 139
Tssr48939 5 125454354 to 125454416 62 + TSS region transcription start site region 48939
Gm40325 5 125464566 to 125466926 2360 + lncRNA gene predicted gene, 40325
Cpgi16646 5 125465678 to 125466049 371 CpG island CpG island 16646
Tssr48940 5 125465995 to 125466038 43 + TSS region transcription start site region 48940
Gm43756 5 125471497 to 125474334 2837 + unclassified gene predicted gene 43756
Cpgi16647 5 125475467 to 125476610 1143 CpG island CpG island 16647
Tssr48941 5 125475826 to 125475860 34 + TSS region transcription start site region 48941
Tssr48942 5 125475864 to 125475889 25 + TSS region transcription start site region 48942
Aacs 5 125475873 to 125517403 41530 + protein coding gene acetoacetyl-CoA synthetase
Gm27551 5 125479377 to 125479453 76 + miRNA gene predicted gene, 27551
Tssr48943 5 125495975 to 125495996 21 + TSS region transcription start site region 48943
Tssr48944 5 125496052 to 125496056 4 + TSS region transcription start site region 48944
Cpgi16648 5 125531593 to 125533440 1847 CpG island CpG island 16648
Tssr48945 5 125531787 to 125531819 32 + TSS region transcription start site region 48945
Tssr48946 5 125532377 to 125532393 16 + TSS region transcription start site region 48946
Tssr48947 5 125532403 to 125532419 16 + TSS region transcription start site region 48947
Tmem132b 5 125532418 to 125792583 260165 + protein coding gene transmembrane protein 132B
Tssr1639 5 125532531 to 125532538 7 + TSS region transcription start site region 1639
Tssr48948 5 125532541 to 125532544 3 + TSS region transcription start site region 48948
Cpgi16649 5 125534591 to 125534844 253 CpG island CpG island 16649
Tssr48949 5 125555437 to 125555439 2 + TSS region transcription start site region 48949
Tssr53455 5 125589030 to 125589039 9 - TSS region transcription start site region 53455
Gm32811 5 125761766 to 125767311 5545 - lncRNA gene predicted gene, 32811
Tssr1640 5 125766433 to 125766447 14 - TSS region transcription start site region 1640
Gm40327 5 125816735 to 125838104 21369 - lncRNA gene predicted gene, 40327
Gm4868 5 125847952 to 125848740 788 - pseudogene predicted gene 4868
Tssr53456 5 125849882 to 125849893 11 - TSS region transcription start site region 53456
Tssr53457 5 125849897 to 125849904 7 - TSS region transcription start site region 53457
Tssr48950 5 125850002 to 125850008 6 + TSS region transcription start site region 48950
Tssr48951 5 125850012 to 125850031 19 + TSS region transcription start site region 48951
Gm40328 5 125860001 to 125861873 1872 - lncRNA gene predicted gene, 40328
Gm32986 5 125911841 to 125926799 14958 - lncRNA gene predicted gene, 32986
Cpgi16650 5 125920011 to 125920413 402 CpG island CpG island 16650
Tssr48952 5 125928765 to 125928779 14 + TSS region transcription start site region 48952
1700048F04Rik 5 125928770 to 125952630 23860 + lincRNA gene RIKEN cDNA 1700048F04 gene
Gm42945 5 125958409 to 125965845 7436 - lincRNA gene predicted gene 42945
Gm42952 5 125963530 to 125988428 24898 + lincRNA gene predicted gene 42952
Gm7774 5 126025941 to 126026473 532 - pseudogene predicted gene 7774
Cpgi16651 5 126026190 to 126026452 262 CpG island CpG island 16651
Gm40329 5 126041188 to 126044008 2820 + lncRNA gene predicted gene, 40329
D5Mit214 5 126090176 to 126090317 141 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 214
Xiaf2 5 126090176 to 144640558 18550382 heritable phenotypic marker X inactivation autosomal factor 2
Bbaa25 5 126090176 to 126090317 141 QTL B.burgdorferi-associated arthritis 25
Ahl21 5 126090176 to 126090317 141 QTL age related hearing loss, early onset 21
D5Mit291 5 126214846 to 126214983 137 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 291
Bwefm 5 126362284 to 126362395 111 QTL body weight females and males day 10
D5Mit213 5 126362284 to 126362395 111 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 213
Gm23151 5 126389548 to 126389654 106 - snRNA gene predicted gene, 23151
Gm37700 5 126448458 to 126449422 964 + unclassified gene predicted gene, 37700
Gm40330 5 126503850 to 126504975 1125 - lincRNA gene predicted gene, 40330
Tssr53458 5 126504958 to 126504966 8 - TSS region transcription start site region 53458
Tssr53459 5 126504971 to 126504979 8 - TSS region transcription start site region 53459
Gm24839 5 126513875 to 126513981 106 - snRNA gene predicted gene, 24839
Gm33239 5 126694279 to 126706598 12319 + lncRNA gene predicted gene, 33239
1700081B01Rik 5 126706914 to 126736252 29338 + lincRNA gene RIKEN cDNA 1700081B01 gene
Gm33347 5 126724326 to 126727284 2958 - lincRNA gene predicted gene, 33347
Tssr53460 5 126727275 to 126727300 25 - TSS region transcription start site region 53460
D5Mit189 5 126730335 to 126730479 144 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 189
D5Mit370 5 126786591 to 126786711 120 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 370
Gm42953 5 126797255 to 126815482 18227 - lincRNA gene predicted gene 42953
D5Mit320 5 126805757 to 126805880 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 320
Hmtb5 5 126805880 to 99801563 -27004317 QTL hemostasis and thrombosis bleeding time 5
Gm40331 5 126852757 to 126885316 32559 + lincRNA gene predicted gene, 40331
D5Mit174 5 126890472 to 126890611 139 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 174
D5Mit161 5 126923890 to 126924008 118 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 161
Tmc1m4 5 126924008 to 54342835 -72581173 QTL Tmc1 modifier 4
D5Mit140 5 126948601 to 126948719 118 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 140
Gm42955 5 127020227 to 127023619 3392 + unclassified gene predicted gene 42955
Tssr48953 5 127027372 to 127027379 7 + TSS region transcription start site region 48953
Tssr48954 5 127027381 to 127027388 7 + TSS region transcription start site region 48954
Tssr48955 5 127027389 to 127027399 10 + TSS region transcription start site region 48955
4933438B17Rik 5 127030789 to 127088529 57740 + lincRNA gene RIKEN cDNA 4933438B17 gene
Tssr48956 5 127030806 to 127030821 15 + TSS region transcription start site region 48956
Tssr48957 5 127030823 to 127030834 11 + TSS region transcription start site region 48957
Gm33491 5 127070093 to 127107436 37343 - lncRNA gene predicted gene, 33491
Gm43475 5 127108069 to 127108856 787 + lincRNA gene predicted gene 43475
D5Ertd159e 5 127113266 to 127113493 227 DNA segment DNA segment, Chr 5, ERATO Doi 159, expressed
D5Mit289 5 127168862 to 127169207 345 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 289
Tssr48958 5 127170549 to 127170579 30 + TSS region transcription start site region 48958
4930572K03Rik 5 127170565 to 127184356 13791 + lincRNA gene RIKEN cDNA 4930572K03 gene
Gm43476 5 127200693 to 127201097 404 - lincRNA gene predicted gene 43476
4930548G05Rik 5 127202362 to 127230534 28172 - lncRNA gene RIKEN cDNA 4930548G05 gene
Cpgi16652 5 127241267 to 127243319 2052 CpG island CpG island 16652
Tssr48959 5 127241785 to 127241798 13 + TSS region transcription start site region 48959
Tssr48960 5 127241807 to 127241849 42 + TSS region transcription start site region 48960
Tmem132c 5 127241826 to 127565790 323964 + protein coding gene transmembrane protein 132C
Cpgi16653 5 127243321 to 127243820 499 CpG island CpG island 16653
Tssr48961 5 127245146 to 127245153 7 + TSS region transcription start site region 48961
Tmem132cos 5 127256860 to 127281623 24763 - antisense lncRNA gene transmembrane protein 132C, opposite strand
Tssr48962 5 127257164 to 127257166 2 + TSS region transcription start site region 48962
Tssr53461 5 127281572 to 127281608 36 - TSS region transcription start site region 53461
Tssr53462 5 127281620 to 127281627 7 - TSS region transcription start site region 53462
D5Mit212 5 127299938 to 127300059 121 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 212
Tssr48963 5 127302607 to 127302611 4 + TSS region transcription start site region 48963
9430087B13Rik 5 127309017 to 127310101 1084 + unclassified gene RIKEN cDNA 9430087B13 gene
Tssr48964 5 127406659 to 127406661 2 + TSS region transcription start site region 48964
Tssr48965 5 127554721 to 127554732 11 + TSS region transcription start site region 48965
Tssr48966 5 127564295 to 127564299 4 + TSS region transcription start site region 48966
Gm42980 5 127578750 to 127580109 1359 + lincRNA gene predicted gene 42980
Slc15a4 5 127595664 to 127632897 37233 - protein coding gene solute carrier family 15, member 4
Tssr48967 5 127615700 to 127615718 18 + TSS region transcription start site region 48967
Tssr48968 5 127615810 to 127615822 12 + TSS region transcription start site region 48968
Cpgi16654 5 127616158 to 127617701 1543 CpG island CpG island 16654
Gm43474 5 127616992 to 127617765 773 + unclassified gene predicted gene 43474
Tssr53463 5 127617343 to 127617354 11 - TSS region transcription start site region 53463
Tssr53464 5 127617372 to 127617426 54 - TSS region transcription start site region 53464
Tssr48969 5 127632057 to 127632075 18 + TSS region transcription start site region 48969
Glt1d1 5 127632130 to 127708750 76620 + protein coding gene glycosyltransferase 1 domain containing 1
Cpgi16655 5 127632168 to 127633002 834 CpG island CpG island 16655
Tssr48970 5 127632238 to 127632271 33 + TSS region transcription start site region 48970
Tssr53465 5 127632915 to 127632946 31 - TSS region transcription start site region 53465
Tssr53466 5 127633260 to 127633263 3 - TSS region transcription start site region 53466
Tssr48971 5 127657495 to 127657500 5 + TSS region transcription start site region 48971
D5Mit215 5 127674588 to 127674706 118 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 215
D5Dcr11 5 127674601 to 127674696 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 11
D5Mit383 5 127680178 to 127680281 103 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology-383
Tssr48972 5 127700619 to 127700630 11 + TSS region transcription start site region 48972