Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:125159232-125449249

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ncor2 5 125017153 to 125179219 162066 - protein coding gene nuclear receptor co-repressor 2
Cpgi16633 5 125176835 to 125177079 244 CpG island CpG island 16633
Cpgi16634 5 125177504 to 125179878 2374 CpG island CpG island 16634
Tssr53411 5 125179140 to 125179147 7 - TSS region transcription start site region 53411
Tssr53412 5 125179155 to 125179229 74 - TSS region transcription start site region 53412
Cpgi16635 5 125215836 to 125216274 438 CpG island CpG island 16635
Gm32585 5 125238314 to 125252407 14093 - lincRNA gene predicted gene, 32585
D5Mit173.1 5 125243682 to 125243824 142 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 173.1
D5Mit173 5 125243794 to 125243965 171 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 173
Cpgi16636 5 125245579 to 125246095 516 CpG island CpG island 16636
Tssr53413 5 125245779 to 125245794 15 - TSS region transcription start site region 53413
Tssr53414 5 125245806 to 125245815 9 - TSS region transcription start site region 53414
Tssr53415 5 125245817 to 125245828 11 - TSS region transcription start site region 53415
Tssr53416 5 125245838 to 125245849 11 - TSS region transcription start site region 53416
Tssr48920 5 125249627 to 125249630 3 + TSS region transcription start site region 48920
Tssr1636 5 125267243 to 125267244 1 + TSS region transcription start site region 1636
Cpgi16637 5 125267477 to 125267670 193 CpG island CpG island 16637
Scarb1 5 125277087 to 125341094 64007 - protein coding gene scavenger receptor class B, member 1
Tssr53417 5 125277156 to 125277165 9 - TSS region transcription start site region 53417
Tssr53418 5 125277737 to 125277753 16 - TSS region transcription start site region 53418
Tssr53419 5 125277835 to 125277865 30 - TSS region transcription start site region 53419
Cpgi16638 5 125283798 to 125284170 372 CpG island CpG island 16638
Tssr53420 5 125283937 to 125283954 17 - TSS region transcription start site region 53420
Tssr53421 5 125289710 to 125289719 9 - TSS region transcription start site region 53421
Tssr53422 5 125289725 to 125289761 36 - TSS region transcription start site region 53422
Tssr48921 5 125294062 to 125294068 6 + TSS region transcription start site region 48921
Tssr53423 5 125294062 to 125294080 18 - TSS region transcription start site region 53423
Tssr53424 5 125294107 to 125294136 29 - TSS region transcription start site region 53424
Tssr53425 5 125298686 to 125298725 39 - TSS region transcription start site region 53425
Tssr48922 5 125300409 to 125300427 18 + TSS region transcription start site region 48922
Tssr53426 5 125300415 to 125300427 12 - TSS region transcription start site region 53426
Tssr53427 5 125300530 to 125300540 10 - TSS region transcription start site region 53427
Tssr53428 5 125303195 to 125303222 27 - TSS region transcription start site region 53428
Gm32701 5 125303232 to 125312588 9356 + lncRNA gene predicted gene, 32701
Tssr48923 5 125303303 to 125303314 11 + TSS region transcription start site region 48923
Tssr1637 5 125304232 to 125304249 17 + TSS region transcription start site region 1637
Tssr53429 5 125304291 to 125304319 28 - TSS region transcription start site region 53429
Cpgi16639 5 125304433 to 125304778 345 CpG island CpG island 16639
Tssr53430 5 125304476 to 125304485 9 - TSS region transcription start site region 53430
Tssr48924 5 125305867 to 125305878 11 + TSS region transcription start site region 48924
Tssr53431 5 125312244 to 125312252 8 - TSS region transcription start site region 53431
Gm42633 5 125318681 to 125321444 2763 - unclassified gene predicted gene 42633
Tssr53432 5 125326335 to 125326385 50 - TSS region transcription start site region 53432
Tssr53433 5 125327691 to 125327740 49 - TSS region transcription start site region 53433
Cpgi16640 5 125340253 to 125341420 1167 CpG island CpG island 16640
Tssr53434 5 125341011 to 125341027 16 - TSS region transcription start site region 53434
Tssr53435 5 125341043 to 125341112 69 - TSS region transcription start site region 53435
Gm40323 5 125361175 to 125370760 9585 + lincRNA gene predicted gene, 40323
D5Mit426 5 125369034 to 125369154 120 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 426
Gm40324 5 125374816 to 125379769 4953 + lncRNA gene predicted gene, 40324
Ubc 5 125385965 to 125390017 4052 - protein coding gene ubiquitin C
Tssr48925 5 125385976 to 125385979 3 + TSS region transcription start site region 48925
Tssr53436 5 125388869 to 125388872 3 - TSS region transcription start site region 53436
Cpgi16641 5 125389089 to 125390292 1203 CpG island CpG island 16641
Tssr53437 5 125389150 to 125389170 20 - TSS region transcription start site region 53437
Tssr53438 5 125389177 to 125389208 31 - TSS region transcription start site region 53438
Tssr53439 5 125389215 to 125389222 7 - TSS region transcription start site region 53439
Tssr48926 5 125389268 to 125389273 5 + TSS region transcription start site region 48926
Tssr48927 5 125389284 to 125389327 43 + TSS region transcription start site region 48927
Gm10382 5 125389322 to 125390554 1232 + protein coding gene predicted gene 10382
Tssr48928 5 125389328 to 125389339 11 + TSS region transcription start site region 48928
Tssr48929 5 125389340 to 125389357 17 + TSS region transcription start site region 48929
Tssr48930 5 125389486 to 125389493 7 + TSS region transcription start site region 48930
Tssr53440 5 125389555 to 125389583 28 - TSS region transcription start site region 53440
Tssr53441 5 125389751 to 125389756 5 - TSS region transcription start site region 53441
Tssr1638 5 125389844 to 125389869 25 + TSS region transcription start site region 1638
Tssr53442 5 125389915 to 125390055 140 - TSS region transcription start site region 53442
Tssr53443 5 125390101 to 125390114 13 - TSS region transcription start site region 53443
Tssr53444 5 125390176 to 125390222 46 - TSS region transcription start site region 53444
Tssr48931 5 125390371 to 125390407 36 + TSS region transcription start site region 48931
Tssr53445 5 125391681 to 125391718 37 - TSS region transcription start site region 53445
Tssr53446 5 125391731 to 125391750 19 - TSS region transcription start site region 53446
Tssr48932 5 125391846 to 125391878 32 + TSS region transcription start site region 48932
Tssr53447 5 125392258 to 125392275 17 - TSS region transcription start site region 53447
Tssr53448 5 125392946 to 125392955 9 - TSS region transcription start site region 53448
Tssr53449 5 125392958 to 125392975 17 - TSS region transcription start site region 53449
Tssr53450 5 125392995 to 125393015 20 - TSS region transcription start site region 53450
Tssr53451 5 125393050 to 125393066 16 - TSS region transcription start site region 53451
Tssr53452 5 125393313 to 125393321 8 - TSS region transcription start site region 53452
Tssr53453 5 125393325 to 125393339 14 - TSS region transcription start site region 53453
Tssr48933 5 125393430 to 125393454 24 + TSS region transcription start site region 48933
Tssr48934 5 125394433 to 125394449 16 + TSS region transcription start site region 48934
Cpgi16642 5 125402776 to 125402932 156 CpG island CpG island 16642
n-TAtgc10 5 125404250 to 125404321 71 - tRNA gene nuclear encoded tRNA alanine 10 (anticodon TGC)
Cpgi16643 5 125405152 to 125405519 367 CpG island CpG island 16643
n-TDgtc15 5 125405607 to 125405678 71 - tRNA gene nuclear encoded tRNA aspartic acid 15 (anticodon GTC)
n-TFgaa7 5 125406055 to 125406127 72 - tRNA gene nuclear encoded tRNA pheylalanine 7 (anticodon GAA)
n-TDgtc14 5 125409016 to 125409087 71 - tRNA gene nuclear encoded tRNA aspartic acid 14 (anticodon GTC)
n-TAtgc5 5 125409472 to 125409543 71 + tRNA gene nuclear encoded tRNA alanine 5 (anticodon TGC)
Dhx37 5 125413858 to 125434121 20263 - protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 37
Cpgi16644 5 125433587 to 125434326 739 CpG island CpG island 16644
Tssr53454 5 125434053 to 125434131 78 - TSS region transcription start site region 53454
Gm43752 5 125435075 to 125435771 696 + pseudogene predicted gene 43752
Cpgi16645 5 125441273 to 125442351 1078 CpG island CpG island 16645
Tssr48935 5 125441546 to 125441614 68 + TSS region transcription start site region 48935
Bri3bp 5 125441568 to 125460370 18802 + protein coding gene Bri3 binding protein
Tssr48936 5 125441618 to 125441667 49 + TSS region transcription start site region 48936
Tssr48937 5 125441673 to 125441674 1 + TSS region transcription start site region 48937
Tssr48938 5 125442111 to 125442123 12 + TSS region transcription start site region 48938