Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:124848509-125109981

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc92 5 124834432 to 124862221 27789 - protein coding gene coiled-coil domain containing 92
Cpgi16624 5 124861371 to 124863766 2395 CpG island CpG island 16624
Tssr53378 5 124861854 to 124861862 8 - TSS region transcription start site region 53378
Tssr53379 5 124861863 to 124861871 8 - TSS region transcription start site region 53379
Tssr53380 5 124861872 to 124861931 59 - TSS region transcription start site region 53380
Tssr53381 5 124861945 to 124861956 11 - TSS region transcription start site region 53381
Tssr53382 5 124861957 to 124861964 7 - TSS region transcription start site region 53382
Tssr53383 5 124861982 to 124861993 11 - TSS region transcription start site region 53383
Tssr53384 5 124862129 to 124862148 19 - TSS region transcription start site region 53384
Tssr53385 5 124862160 to 124862204 44 - TSS region transcription start site region 53385
Tssr48915 5 124862198 to 124862232 34 + TSS region transcription start site region 48915
Tssr53386 5 124862216 to 124862227 11 - TSS region transcription start site region 53386
Tssr53387 5 124862239 to 124862250 11 - TSS region transcription start site region 53387
Tssr53388 5 124862277 to 124862293 16 - TSS region transcription start site region 53388
Tssr53389 5 124862296 to 124862301 5 - TSS region transcription start site region 53389
Tssr53390 5 124862368 to 124862410 42 - TSS region transcription start site region 53390
Tssr53391 5 124862466 to 124862483 17 - TSS region transcription start site region 53391
Tssr53392 5 124862485 to 124862501 16 - TSS region transcription start site region 53392
Tssr48916 5 124862674 to 124862771 97 + TSS region transcription start site region 48916
Zfp664 5 124862705 to 124888630 25925 + protein coding gene zinc finger protein 664
Gm32449 5 124894977 to 124898499 3522 - lncRNA gene predicted gene, 32449
Gm40320 5 124899775 to 124905750 5975 + lncRNA gene predicted gene, 40320
Gm40321 5 124954244 to 124977910 23666 - lncRNA gene predicted gene, 40321
Gm32529 5 124978509 to 124979981 1472 + lncRNA gene predicted gene, 32529
Cpgi16625 5 125003399 to 125003900 501 CpG island CpG island 16625
Tssr48917 5 125003440 to 125003466 26 + TSS region transcription start site region 48917
Rflna 5 125003475 to 125012547 9072 + protein coding gene refilin A
Ncor2 5 125017153 to 125179219 162066 - protein coding gene nuclear receptor co-repressor 2
Cpgi16626 5 125028512 to 125028699 187 CpG island CpG island 16626
Tssr53393 5 125037546 to 125037594 48 - TSS region transcription start site region 53393
Tssr53394 5 125042794 to 125042818 24 - TSS region transcription start site region 53394
Tssr53395 5 125042823 to 125042826 3 - TSS region transcription start site region 53395
Tssr53396 5 125043041 to 125043050 9 - TSS region transcription start site region 53396
Gm42838 5 125057841 to 125058370 529 + antisense lncRNA gene predicted gene 42838
Cpgi16627 5 125057885 to 125058652 767 CpG island CpG island 16627
Tssr53397 5 125058333 to 125058345 12 - TSS region transcription start site region 53397
Tssr53398 5 125058367 to 125058411 44 - TSS region transcription start site region 53398
Tssr53399 5 125058535 to 125058540 5 - TSS region transcription start site region 53399
Cpgi16628 5 125063148 to 125063332 184 CpG island CpG island 16628
Tssr48918 5 125071576 to 125071583 7 + TSS region transcription start site region 48918
Tssr53400 5 125081284 to 125081328 44 - TSS region transcription start site region 53400
D5Ertd470e 5 125082481 to 125082682 201 DNA segment DNA segment, Chr 5, ERATO Doi 470, expressed
Gm42839 5 125086841 to 125090359 3518 + antisense lncRNA gene predicted gene 42839
Elmaz2 5 125101165 to 141714711 16613546 QTL elevated maze behavior 2
D5Mit138 5 125101165 to 125101311 146 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 138
Tssr53401 5 125102902 to 125102913 11 - TSS region transcription start site region 53401
Cpgi16629 5 125106005 to 125106456 451 CpG island CpG island 16629
Tssr53402 5 125106319 to 125106350 31 - TSS region transcription start site region 53402