Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:124633509-125324981

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115 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atp6v0a2 5 124629052 to 124724455 95403 + protein coding gene ATPase, H+ transporting, lysosomal V0 subunit A2
Tssr48912 5 124637488 to 124637501 13 + TSS region transcription start site region 48912
Tssr1635 5 124637504 to 124637524 20 + TSS region transcription start site region 1635
Gm24854 5 124717077 to 124717174 97 - snRNA gene predicted gene, 24854
4930404A12Rik 5 124721997 to 124725079 3082 - antisense lncRNA gene RIKEN cDNA 4930404A12 gene
Cpgi16622 5 124724945 to 124725514 569 CpG island CpG island 16622
Dnah10 5 124725085 to 124834308 109223 + protein coding gene dynein, axonemal, heavy chain 10
Tssr48913 5 124725119 to 124725137 18 + TSS region transcription start site region 48913
Tssr48914 5 124796372 to 124796375 3 + TSS region transcription start site region 48914
Gm43777 5 124817801 to 124818312 511 - antisense lncRNA gene predicted gene 43777
Trigq4 5 124829235 to 124829348 113 QTL triglyceride QTL 4
Chlq11 5 124829235 to 124829348 113 QTL circulating hormone level QTL 11
Ahl20 5 124829235 to 124829348 113 QTL age related hearing loss, early onset 20
D5Mit95 5 124829235 to 124829348 113 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 95
Ccdc92 5 124834432 to 124862221 27789 - protein coding gene coiled-coil domain containing 92
Cpgi16623 5 124835295 to 124835793 498 CpG island CpG island 16623
Cpgi16624 5 124861371 to 124863766 2395 CpG island CpG island 16624
Tssr53378 5 124861854 to 124861862 8 - TSS region transcription start site region 53378
Tssr53379 5 124861863 to 124861871 8 - TSS region transcription start site region 53379
Tssr53380 5 124861872 to 124861931 59 - TSS region transcription start site region 53380
Tssr53381 5 124861945 to 124861956 11 - TSS region transcription start site region 53381
Tssr53382 5 124861957 to 124861964 7 - TSS region transcription start site region 53382
Tssr53383 5 124861982 to 124861993 11 - TSS region transcription start site region 53383
Tssr53384 5 124862129 to 124862148 19 - TSS region transcription start site region 53384
Tssr53385 5 124862160 to 124862204 44 - TSS region transcription start site region 53385
Tssr48915 5 124862198 to 124862232 34 + TSS region transcription start site region 48915
Tssr53386 5 124862216 to 124862227 11 - TSS region transcription start site region 53386
Tssr53387 5 124862239 to 124862250 11 - TSS region transcription start site region 53387
Tssr53388 5 124862277 to 124862293 16 - TSS region transcription start site region 53388
Tssr53389 5 124862296 to 124862301 5 - TSS region transcription start site region 53389
Tssr53390 5 124862368 to 124862410 42 - TSS region transcription start site region 53390
Tssr53391 5 124862466 to 124862483 17 - TSS region transcription start site region 53391
Tssr53392 5 124862485 to 124862501 16 - TSS region transcription start site region 53392
Tssr48916 5 124862674 to 124862771 97 + TSS region transcription start site region 48916
Zfp664 5 124862705 to 124888630 25925 + protein coding gene zinc finger protein 664
Gm32449 5 124894977 to 124898499 3522 - lncRNA gene predicted gene, 32449
Gm40320 5 124899775 to 124905750 5975 + lncRNA gene predicted gene, 40320
Gm40321 5 124954244 to 124977910 23666 - lncRNA gene predicted gene, 40321
Gm32529 5 124978509 to 124979981 1472 + lncRNA gene predicted gene, 32529
Cpgi16625 5 125003399 to 125003900 501 CpG island CpG island 16625
Tssr48917 5 125003440 to 125003466 26 + TSS region transcription start site region 48917
Rflna 5 125003475 to 125012547 9072 + protein coding gene refilin A
Ncor2 5 125017153 to 125179219 162066 - protein coding gene nuclear receptor co-repressor 2
Cpgi16626 5 125028512 to 125028699 187 CpG island CpG island 16626
Tssr53393 5 125037546 to 125037594 48 - TSS region transcription start site region 53393
Tssr53394 5 125042794 to 125042818 24 - TSS region transcription start site region 53394
Tssr53395 5 125042823 to 125042826 3 - TSS region transcription start site region 53395
Tssr53396 5 125043041 to 125043050 9 - TSS region transcription start site region 53396
Gm42838 5 125057841 to 125058370 529 + antisense lncRNA gene predicted gene 42838
Cpgi16627 5 125057885 to 125058652 767 CpG island CpG island 16627
Tssr53397 5 125058333 to 125058345 12 - TSS region transcription start site region 53397
Tssr53398 5 125058367 to 125058411 44 - TSS region transcription start site region 53398
Tssr53399 5 125058535 to 125058540 5 - TSS region transcription start site region 53399
Cpgi16628 5 125063148 to 125063332 184 CpG island CpG island 16628
Tssr48918 5 125071576 to 125071583 7 + TSS region transcription start site region 48918
Tssr53400 5 125081284 to 125081328 44 - TSS region transcription start site region 53400
D5Ertd470e 5 125082481 to 125082682 201 DNA segment DNA segment, Chr 5, ERATO Doi 470, expressed
Gm42839 5 125086841 to 125090359 3518 + antisense lncRNA gene predicted gene 42839
Elmaz2 5 125101165 to 141714711 16613546 QTL elevated maze behavior 2
D5Mit138 5 125101165 to 125101311 146 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 138
Tssr53401 5 125102902 to 125102913 11 - TSS region transcription start site region 53401
Cpgi16629 5 125106005 to 125106456 451 CpG island CpG island 16629
Tssr53402 5 125106319 to 125106350 31 - TSS region transcription start site region 53402
Tssr53403 5 125119570 to 125119607 37 - TSS region transcription start site region 53403
Tssr53404 5 125124807 to 125124839 32 - TSS region transcription start site region 53404
Tssr53405 5 125128059 to 125128075 16 - TSS region transcription start site region 53405
Cpgi16630 5 125128999 to 125129256 257 CpG island CpG island 16630
Cpgi16631 5 125140255 to 125140577 322 CpG island CpG island 16631
Tssr53406 5 125140869 to 125140889 20 - TSS region transcription start site region 53406
Tssr53407 5 125140894 to 125140921 27 - TSS region transcription start site region 53407
Tssr53408 5 125140956 to 125141042 86 - TSS region transcription start site region 53408
Tssr53409 5 125141214 to 125141235 21 - TSS region transcription start site region 53409
Tssr53410 5 125141251 to 125141273 22 - TSS region transcription start site region 53410
Tssr48919 5 125158438 to 125158444 6 + TSS region transcription start site region 48919
Cpgi16633 5 125176835 to 125177079 244 CpG island CpG island 16633
Cpgi16634 5 125177504 to 125179878 2374 CpG island CpG island 16634
Tssr53411 5 125179140 to 125179147 7 - TSS region transcription start site region 53411
Tssr53412 5 125179155 to 125179229 74 - TSS region transcription start site region 53412
Cpgi16635 5 125215836 to 125216274 438 CpG island CpG island 16635
Gm32585 5 125238314 to 125252407 14093 - lincRNA gene predicted gene, 32585
D5Mit173.1 5 125243682 to 125243824 142 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 173.1
D5Mit173 5 125243794 to 125243965 171 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 173
Cpgi16636 5 125245579 to 125246095 516 CpG island CpG island 16636
Tssr53413 5 125245779 to 125245794 15 - TSS region transcription start site region 53413
Tssr53414 5 125245806 to 125245815 9 - TSS region transcription start site region 53414
Tssr53415 5 125245817 to 125245828 11 - TSS region transcription start site region 53415
Tssr53416 5 125245838 to 125245849 11 - TSS region transcription start site region 53416
Tssr48920 5 125249627 to 125249630 3 + TSS region transcription start site region 48920
Tssr1636 5 125267243 to 125267244 1 + TSS region transcription start site region 1636
Cpgi16637 5 125267477 to 125267670 193 CpG island CpG island 16637
Scarb1 5 125277087 to 125341094 64007 - protein coding gene scavenger receptor class B, member 1
Tssr53417 5 125277156 to 125277165 9 - TSS region transcription start site region 53417
Tssr53418 5 125277737 to 125277753 16 - TSS region transcription start site region 53418
Tssr53419 5 125277835 to 125277865 30 - TSS region transcription start site region 53419
Cpgi16638 5 125283798 to 125284170 372 CpG island CpG island 16638
Tssr53420 5 125283937 to 125283954 17 - TSS region transcription start site region 53420
Tssr53421 5 125289710 to 125289719 9 - TSS region transcription start site region 53421
Tssr53422 5 125289725 to 125289761 36 - TSS region transcription start site region 53422
Tssr48921 5 125294062 to 125294068 6 + TSS region transcription start site region 48921
Tssr53423 5 125294062 to 125294080 18 - TSS region transcription start site region 53423
Tssr53424 5 125294107 to 125294136 29 - TSS region transcription start site region 53424
Tssr53425 5 125298686 to 125298725 39 - TSS region transcription start site region 53425
Tssr48922 5 125300409 to 125300427 18 + TSS region transcription start site region 48922
Tssr53426 5 125300415 to 125300427 12 - TSS region transcription start site region 53426
Tssr53427 5 125300530 to 125300540 10 - TSS region transcription start site region 53427
Tssr53428 5 125303195 to 125303222 27 - TSS region transcription start site region 53428
Gm32701 5 125303232 to 125312588 9356 + lncRNA gene predicted gene, 32701
Tssr48923 5 125303303 to 125303314 11 + TSS region transcription start site region 48923
Tssr1637 5 125304232 to 125304249 17 + TSS region transcription start site region 1637
Tssr53429 5 125304291 to 125304319 28 - TSS region transcription start site region 53429
Cpgi16639 5 125304433 to 125304778 345 CpG island CpG island 16639
Tssr53430 5 125304476 to 125304485 9 - TSS region transcription start site region 53430
Tssr48924 5 125305867 to 125305878 11 + TSS region transcription start site region 48924
Tssr53431 5 125312244 to 125312252 8 - TSS region transcription start site region 53431
Gm42633 5 125318681 to 125321444 2763 - unclassified gene predicted gene 42633