Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:124534052-124819455

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi16616 5 124536875 to 124537160 285 CpG island CpG island 16616
Cpgi16617 5 124540330 to 124541630 1300 CpG island CpG island 16617
Tssr48903 5 124540743 to 124540786 43 + TSS region transcription start site region 48903
Tmed2 5 124540791 to 124550503 9712 + protein coding gene transmembrane p24 trafficking protein 2
Tssr53372 5 124541081 to 124541095 14 - TSS region transcription start site region 53372
Tssr48904 5 124541296 to 124541315 19 + TSS region transcription start site region 48904
Cpgi16618 5 124552553 to 124553264 711 CpG island CpG island 16618
Tssr53373 5 124552804 to 124552834 30 - TSS region transcription start site region 53373
Tssr48905 5 124552845 to 124552903 58 + TSS region transcription start site region 48905
Ddx55 5 124552864 to 124569660 16796 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 55
Tssr48906 5 124552905 to 124552918 13 + TSS region transcription start site region 48906
Tssr53374 5 124557085 to 124557095 10 - TSS region transcription start site region 53374
Eif2b1 5 124570214 to 124579131 8917 - protein coding gene eukaryotic translation initiation factor 2B, subunit 1 (alpha)
Cpgi16619 5 124578684 to 124579694 1010 CpG island CpG island 16619
Tssr53375 5 124579023 to 124579044 21 - TSS region transcription start site region 53375
Tssr53376 5 124579045 to 124579075 30 - TSS region transcription start site region 53376
Tssr53377 5 124579083 to 124579095 12 - TSS region transcription start site region 53377
Tssr48907 5 124579115 to 124579124 9 + TSS region transcription start site region 48907
Tssr48908 5 124579134 to 124579184 50 + TSS region transcription start site region 48908
Gtf2h3 5 124579148 to 124597680 18532 + protein coding gene general transcription factor IIH, polypeptide 3
Cpgi16620 5 124598555 to 124599290 735 CpG island CpG island 16620
Tctn2 5 124598749 to 124627738 28989 + protein coding gene tectonic family member 2
Tssr48909 5 124598752 to 124598798 46 + TSS region transcription start site region 48909
D5Mit279 5 124601675 to 124601797 122 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 279
Cpgi16621 5 124628892 to 124629820 928 CpG island CpG island 16621
Tssr48910 5 124629050 to 124629097 47 + TSS region transcription start site region 48910
Atp6v0a2 5 124629052 to 124724455 95403 + protein coding gene ATPase, H+ transporting, lysosomal V0 subunit A2
Tssr48911 5 124629099 to 124629113 14 + TSS region transcription start site region 48911
Tssr48912 5 124637488 to 124637501 13 + TSS region transcription start site region 48912
Tssr1635 5 124637504 to 124637524 20 + TSS region transcription start site region 1635
Gm24854 5 124717077 to 124717174 97 - snRNA gene predicted gene, 24854
4930404A12Rik 5 124721997 to 124725079 3082 - antisense lncRNA gene RIKEN cDNA 4930404A12 gene
Cpgi16622 5 124724945 to 124725514 569 CpG island CpG island 16622
Dnah10 5 124725085 to 124834308 109223 + protein coding gene dynein, axonemal, heavy chain 10
Tssr48913 5 124725119 to 124725137 18 + TSS region transcription start site region 48913
Tssr48914 5 124796372 to 124796375 3 + TSS region transcription start site region 48914
Gm43777 5 124817801 to 124818312 511 - antisense lncRNA gene predicted gene 43777