Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:124482129-125242148

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126 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi16614 5 124483090 to 124483715 625 CpG island CpG island 16614
Tssr48895 5 124483128 to 124483158 30 + TSS region transcription start site region 48895
Snrnp35 5 124483134 to 124491124 7990 + protein coding gene small nuclear ribonucleoprotein 35 (U11/U12)
Tssr48896 5 124483165 to 124483185 20 + TSS region transcription start site region 48896
Tssr48897 5 124483471 to 124483491 20 + TSS region transcription start site region 48897
Tssr48898 5 124483509 to 124483520 11 + TSS region transcription start site region 48898
Tssr48899 5 124483553 to 124483592 39 + TSS region transcription start site region 48899
Rilpl1 5 124493080 to 124531391 38311 - protein coding gene Rab interacting lysosomal protein-like 1
Tssr53367 5 124496970 to 124497007 37 - TSS region transcription start site region 53367
Tssr48900 5 124497100 to 124497140 40 + TSS region transcription start site region 48900
Tssr48901 5 124522641 to 124522646 5 + TSS region transcription start site region 48901
Gm6046 5 124522643 to 124523121 478 + pseudogene predicted gene 6046
Cpgi16615 5 124530267 to 124531851 1584 CpG island CpG island 16615
Tssr48902 5 124530687 to 124530741 54 + TSS region transcription start site region 48902
Tssr53368 5 124530983 to 124531040 57 - TSS region transcription start site region 53368
Gm43034 5 124531133 to 124532496 1363 + unclassified gene predicted gene 43034
Tssr53369 5 124531194 to 124531232 38 - TSS region transcription start site region 53369
Tssr53370 5 124531291 to 124531307 16 - TSS region transcription start site region 53370
Tssr53371 5 124531308 to 124531393 85 - TSS region transcription start site region 53371
Cpgi16616 5 124536875 to 124537160 285 CpG island CpG island 16616
Cpgi16617 5 124540330 to 124541630 1300 CpG island CpG island 16617
Tssr48903 5 124540743 to 124540786 43 + TSS region transcription start site region 48903
Tmed2 5 124540791 to 124550503 9712 + protein coding gene transmembrane p24 trafficking protein 2
Tssr53372 5 124541081 to 124541095 14 - TSS region transcription start site region 53372
Tssr48904 5 124541296 to 124541315 19 + TSS region transcription start site region 48904
Cpgi16618 5 124552553 to 124553264 711 CpG island CpG island 16618
Tssr53373 5 124552804 to 124552834 30 - TSS region transcription start site region 53373
Tssr48905 5 124552845 to 124552903 58 + TSS region transcription start site region 48905
Ddx55 5 124552864 to 124569660 16796 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 55
Tssr48906 5 124552905 to 124552918 13 + TSS region transcription start site region 48906
Tssr53374 5 124557085 to 124557095 10 - TSS region transcription start site region 53374
Eif2b1 5 124570214 to 124579131 8917 - protein coding gene eukaryotic translation initiation factor 2B, subunit 1 (alpha)
Cpgi16619 5 124578684 to 124579694 1010 CpG island CpG island 16619
Tssr53375 5 124579023 to 124579044 21 - TSS region transcription start site region 53375
Tssr53376 5 124579045 to 124579075 30 - TSS region transcription start site region 53376
Tssr53377 5 124579083 to 124579095 12 - TSS region transcription start site region 53377
Tssr48907 5 124579115 to 124579124 9 + TSS region transcription start site region 48907
Tssr48908 5 124579134 to 124579184 50 + TSS region transcription start site region 48908
Gtf2h3 5 124579148 to 124597680 18532 + protein coding gene general transcription factor IIH, polypeptide 3
Cpgi16620 5 124598555 to 124599290 735 CpG island CpG island 16620
Tctn2 5 124598749 to 124627738 28989 + protein coding gene tectonic family member 2
Tssr48909 5 124598752 to 124598798 46 + TSS region transcription start site region 48909
D5Mit279 5 124601675 to 124601797 122 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 279
Cpgi16621 5 124628892 to 124629820 928 CpG island CpG island 16621
Tssr48910 5 124629050 to 124629097 47 + TSS region transcription start site region 48910
Atp6v0a2 5 124629052 to 124724455 95403 + protein coding gene ATPase, H+ transporting, lysosomal V0 subunit A2
Tssr48911 5 124629099 to 124629113 14 + TSS region transcription start site region 48911
Tssr48912 5 124637488 to 124637501 13 + TSS region transcription start site region 48912
Tssr1635 5 124637504 to 124637524 20 + TSS region transcription start site region 1635
Gm24854 5 124717077 to 124717174 97 - snRNA gene predicted gene, 24854
4930404A12Rik 5 124721997 to 124725079 3082 - antisense lncRNA gene RIKEN cDNA 4930404A12 gene
Cpgi16622 5 124724945 to 124725514 569 CpG island CpG island 16622
Dnah10 5 124725085 to 124834308 109223 + protein coding gene dynein, axonemal, heavy chain 10
Tssr48913 5 124725119 to 124725137 18 + TSS region transcription start site region 48913
Tssr48914 5 124796372 to 124796375 3 + TSS region transcription start site region 48914
Gm43777 5 124817801 to 124818312 511 - antisense lncRNA gene predicted gene 43777
D5Mit95 5 124829235 to 124829348 113 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 95
Ahl20 5 124829235 to 124829348 113 QTL age related hearing loss, early onset 20
Trigq4 5 124829235 to 124829348 113 QTL triglyceride QTL 4
Chlq11 5 124829235 to 124829348 113 QTL circulating hormone level QTL 11
Ccdc92 5 124834432 to 124862221 27789 - protein coding gene coiled-coil domain containing 92
Cpgi16623 5 124835295 to 124835793 498 CpG island CpG island 16623
Cpgi16624 5 124861371 to 124863766 2395 CpG island CpG island 16624
Tssr53378 5 124861854 to 124861862 8 - TSS region transcription start site region 53378
Tssr53379 5 124861863 to 124861871 8 - TSS region transcription start site region 53379
Tssr53380 5 124861872 to 124861931 59 - TSS region transcription start site region 53380
Tssr53381 5 124861945 to 124861956 11 - TSS region transcription start site region 53381
Tssr53382 5 124861957 to 124861964 7 - TSS region transcription start site region 53382
Tssr53383 5 124861982 to 124861993 11 - TSS region transcription start site region 53383
Tssr53384 5 124862129 to 124862148 19 - TSS region transcription start site region 53384
Tssr53385 5 124862160 to 124862204 44 - TSS region transcription start site region 53385
Tssr48915 5 124862198 to 124862232 34 + TSS region transcription start site region 48915
Tssr53386 5 124862216 to 124862227 11 - TSS region transcription start site region 53386
Tssr53387 5 124862239 to 124862250 11 - TSS region transcription start site region 53387
Tssr53388 5 124862277 to 124862293 16 - TSS region transcription start site region 53388
Tssr53389 5 124862296 to 124862301 5 - TSS region transcription start site region 53389
Tssr53390 5 124862368 to 124862410 42 - TSS region transcription start site region 53390
Tssr53391 5 124862466 to 124862483 17 - TSS region transcription start site region 53391
Tssr53392 5 124862485 to 124862501 16 - TSS region transcription start site region 53392
Tssr48916 5 124862674 to 124862771 97 + TSS region transcription start site region 48916
Zfp664 5 124862705 to 124888630 25925 + protein coding gene zinc finger protein 664
Gm32449 5 124894977 to 124898499 3522 - lncRNA gene predicted gene, 32449
Gm40320 5 124899775 to 124905750 5975 + lncRNA gene predicted gene, 40320
Gm40321 5 124954244 to 124977910 23666 - lncRNA gene predicted gene, 40321
Gm32529 5 124978509 to 124979981 1472 + lncRNA gene predicted gene, 32529
Cpgi16625 5 125003399 to 125003900 501 CpG island CpG island 16625
Tssr48917 5 125003440 to 125003466 26 + TSS region transcription start site region 48917
Rflna 5 125003475 to 125012547 9072 + protein coding gene refilin A
Ncor2 5 125017153 to 125179219 162066 - protein coding gene nuclear receptor co-repressor 2
Cpgi16626 5 125028512 to 125028699 187 CpG island CpG island 16626
Tssr53393 5 125037546 to 125037594 48 - TSS region transcription start site region 53393
Tssr53394 5 125042794 to 125042818 24 - TSS region transcription start site region 53394
Tssr53395 5 125042823 to 125042826 3 - TSS region transcription start site region 53395
Tssr53396 5 125043041 to 125043050 9 - TSS region transcription start site region 53396
Gm42838 5 125057841 to 125058370 529 + antisense lncRNA gene predicted gene 42838
Cpgi16627 5 125057885 to 125058652 767 CpG island CpG island 16627
Tssr53397 5 125058333 to 125058345 12 - TSS region transcription start site region 53397
Tssr53398 5 125058367 to 125058411 44 - TSS region transcription start site region 53398
Tssr53399 5 125058535 to 125058540 5 - TSS region transcription start site region 53399
Cpgi16628 5 125063148 to 125063332 184 CpG island CpG island 16628
Tssr48918 5 125071576 to 125071583 7 + TSS region transcription start site region 48918
Tssr53400 5 125081284 to 125081328 44 - TSS region transcription start site region 53400
D5Ertd470e 5 125082481 to 125082682 201 DNA segment DNA segment, Chr 5, ERATO Doi 470, expressed
Gm42839 5 125086841 to 125090359 3518 + antisense lncRNA gene predicted gene 42839
D5Mit138 5 125101165 to 125101311 146 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 138
Elmaz2 5 125101165 to 141714711 16613546 QTL elevated maze behavior 2
Tssr53401 5 125102902 to 125102913 11 - TSS region transcription start site region 53401
Cpgi16629 5 125106005 to 125106456 451 CpG island CpG island 16629
Tssr53402 5 125106319 to 125106350 31 - TSS region transcription start site region 53402
Tssr53403 5 125119570 to 125119607 37 - TSS region transcription start site region 53403
Tssr53404 5 125124807 to 125124839 32 - TSS region transcription start site region 53404
Tssr53405 5 125128059 to 125128075 16 - TSS region transcription start site region 53405
Cpgi16630 5 125128999 to 125129256 257 CpG island CpG island 16630
Cpgi16631 5 125140255 to 125140577 322 CpG island CpG island 16631
Tssr53406 5 125140869 to 125140889 20 - TSS region transcription start site region 53406
Tssr53407 5 125140894 to 125140921 27 - TSS region transcription start site region 53407
Tssr53408 5 125140956 to 125141042 86 - TSS region transcription start site region 53408
Tssr53409 5 125141214 to 125141235 21 - TSS region transcription start site region 53409
Tssr53410 5 125141251 to 125141273 22 - TSS region transcription start site region 53410
Tssr48919 5 125158438 to 125158444 6 + TSS region transcription start site region 48919
Cpgi16633 5 125176835 to 125177079 244 CpG island CpG island 16633
Cpgi16634 5 125177504 to 125179878 2374 CpG island CpG island 16634
Tssr53411 5 125179140 to 125179147 7 - TSS region transcription start site region 53411
Tssr53412 5 125179155 to 125179229 74 - TSS region transcription start site region 53412
Cpgi16635 5 125215836 to 125216274 438 CpG island CpG island 16635
Gm32585 5 125238314 to 125252407 14093 - lincRNA gene predicted gene, 32585