Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:124349607-124501282

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdk2ap1 5 124345439 to 124354628 9189 - protein coding gene CDK2 (cyclin-dependent kinase 2)-associated protein 1
Tssr53340 5 124350912 to 124350924 12 - TSS region transcription start site region 53340
Tssr53341 5 124351183 to 124351224 41 - TSS region transcription start site region 53341
Tssr53342 5 124351225 to 124351255 30 - TSS region transcription start site region 53342
Tssr53343 5 124351267 to 124351286 19 - TSS region transcription start site region 53343
Tssr53344 5 124352257 to 124352302 45 - TSS region transcription start site region 53344
Cpgi16607 5 124352646 to 124352821 175 CpG island CpG island 16607
Cpgi16608 5 124353222 to 124354880 1658 CpG island CpG island 16608
Tssr53345 5 124354539 to 124354554 15 - TSS region transcription start site region 53345
Tssr53346 5 124354756 to 124354777 21 - TSS region transcription start site region 53346
Tssr53347 5 124354805 to 124354821 16 - TSS region transcription start site region 53347
Sbno1 5 124368702 to 124425951 57249 - protein coding gene strawberry notch 1
Tssr53348 5 124373265 to 124373269 4 - TSS region transcription start site region 53348
Tssr53349 5 124392023 to 124392040 17 - TSS region transcription start site region 53349
Tssr53350 5 124392605 to 124392644 39 - TSS region transcription start site region 53350
Tssr53351 5 124393824 to 124393856 32 - TSS region transcription start site region 53351
Tssr53352 5 124396034 to 124396048 14 - TSS region transcription start site region 53352
Tssr53353 5 124400072 to 124400108 36 - TSS region transcription start site region 53353
Cpgi16609 5 124424607 to 124426282 1675 CpG island CpG island 16609
Gm37415 5 124424697 to 124426879 2182 + unclassified gene predicted gene, 37415
Gm27486 5 124425510 to 124425589 79 - miRNA gene predicted gene, 27486
Tssr53354 5 124425548 to 124425566 18 - TSS region transcription start site region 53354
Tssr53355 5 124425575 to 124425601 26 - TSS region transcription start site region 53355
Tssr53356 5 124425907 to 124425946 39 - TSS region transcription start site region 53356
Tssr53357 5 124425949 to 124426001 52 - TSS region transcription start site region 53357
Tssr53358 5 124439539 to 124439593 54 - TSS region transcription start site region 53358
Cpgi16610 5 124439596 to 124440508 912 CpG island CpG island 16610
Tssr48860 5 124439891 to 124439991 100 + TSS region transcription start site region 48860
Kmt5a 5 124439930 to 124462308 22378 + protein coding gene lysine methyltransferase 5A
Tssr48861 5 124444468 to 124444471 3 + TSS region transcription start site region 48861
Cpgi16611 5 124444753 to 124446641 1888 CpG island CpG island 16611
Tssr53359 5 124445377 to 124445391 14 - TSS region transcription start site region 53359
Tssr48862 5 124445377 to 124445388 11 + TSS region transcription start site region 48862
Tssr48863 5 124445461 to 124445532 71 + TSS region transcription start site region 48863
Tssr48864 5 124446236 to 124446248 12 + TSS region transcription start site region 48864
Tssr48865 5 124446689 to 124446717 28 + TSS region transcription start site region 48865
Tssr48866 5 124446727 to 124446747 20 + TSS region transcription start site region 48866
Tssr48867 5 124446748 to 124446776 28 + TSS region transcription start site region 48867
Tssr48868 5 124446787 to 124446814 27 + TSS region transcription start site region 48868
Tssr48869 5 124446864 to 124446879 15 + TSS region transcription start site region 48869
Tssr48870 5 124446900 to 124446911 11 + TSS region transcription start site region 48870
Tssr48871 5 124446939 to 124446963 24 + TSS region transcription start site region 48871
Tssr48872 5 124446972 to 124446983 11 + TSS region transcription start site region 48872
Tssr48873 5 124447009 to 124447018 9 + TSS region transcription start site region 48873
Tssr48874 5 124447026 to 124447037 11 + TSS region transcription start site region 48874
Tssr48875 5 124447147 to 124447158 11 + TSS region transcription start site region 48875
Tssr48876 5 124447162 to 124447177 15 + TSS region transcription start site region 48876
Tssr48877 5 124447185 to 124447196 11 + TSS region transcription start site region 48877
Tssr48878 5 124450164 to 124450173 9 + TSS region transcription start site region 48878
Tssr48879 5 124450174 to 124450184 10 + TSS region transcription start site region 48879
Tssr48880 5 124450190 to 124450203 13 + TSS region transcription start site region 48880
Tssr48881 5 124450372 to 124450384 12 + TSS region transcription start site region 48881
Tssr48882 5 124450405 to 124450424 19 + TSS region transcription start site region 48882
Tssr48883 5 124450428 to 124450437 9 + TSS region transcription start site region 48883
Tssr48884 5 124450803 to 124450829 26 + TSS region transcription start site region 48884
Tssr48885 5 124450831 to 124450848 17 + TSS region transcription start site region 48885
Tssr1633 5 124450850 to 124450859 9 + TSS region transcription start site region 1633
Tssr48886 5 124451149 to 124451167 18 + TSS region transcription start site region 48886
Tssr48887 5 124451176 to 124451194 18 + TSS region transcription start site region 48887
Tssr48888 5 124451212 to 124451223 11 + TSS region transcription start site region 48888
Tssr1634 5 124451296 to 124451343 47 + TSS region transcription start site region 1634
Cpgi16612 5 124453256 to 124453562 306 CpG island CpG island 16612
Tssr48889 5 124459886 to 124459901 15 + TSS region transcription start site region 48889
Tssr48890 5 124460671 to 124460706 35 + TSS region transcription start site region 48890
Tssr48891 5 124460756 to 124460768 12 + TSS region transcription start site region 48891
Rilpl2 5 124463265 to 124478235 14970 - protein coding gene Rab interacting lysosomal protein-like 2
Gm15621 5 124472427 to 124472790 363 + pseudogene predicted gene 15621
Tssr48892 5 124475489 to 124475568 79 + TSS region transcription start site region 48892
Tssr53360 5 124476437 to 124476446 9 - TSS region transcription start site region 53360
Tssr53361 5 124477465 to 124477491 26 - TSS region transcription start site region 53361
Cpgi16613 5 124477744 to 124478476 732 CpG island CpG island 16613
Tssr48893 5 124478085 to 124478089 4 + TSS region transcription start site region 48893
Tssr53362 5 124478271 to 124478282 11 - TSS region transcription start site region 53362
Tssr53363 5 124478284 to 124478295 11 - TSS region transcription start site region 53363
Tssr53364 5 124478301 to 124478328 27 - TSS region transcription start site region 53364
Tssr53365 5 124478330 to 124478384 54 - TSS region transcription start site region 53365
Tssr48894 5 124479038 to 124479054 16 + TSS region transcription start site region 48894
Tssr53366 5 124480038 to 124480063 25 - TSS region transcription start site region 53366
Cpgi16614 5 124483090 to 124483715 625 CpG island CpG island 16614
Tssr48895 5 124483128 to 124483158 30 + TSS region transcription start site region 48895
Snrnp35 5 124483134 to 124491124 7990 + protein coding gene small nuclear ribonucleoprotein 35 (U11/U12)
Tssr48896 5 124483165 to 124483185 20 + TSS region transcription start site region 48896
Tssr48897 5 124483471 to 124483491 20 + TSS region transcription start site region 48897
Tssr48898 5 124483509 to 124483520 11 + TSS region transcription start site region 48898
Tssr48899 5 124483553 to 124483592 39 + TSS region transcription start site region 48899
Rilpl1 5 124493080 to 124531391 38311 - protein coding gene Rab interacting lysosomal protein-like 1
Tssr53367 5 124496970 to 124497007 37 - TSS region transcription start site region 53367
Tssr48900 5 124497100 to 124497140 40 + TSS region transcription start site region 48900