Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:124099607-124751282

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194 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D5Mit369 5 124100052 to 124100176 124 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 369
Skts4 5 124100176 to 89271017 -34829159 QTL skin tumor susceptibility 4
Gm16001 5 124111109 to 124112264 1155 - lincRNA gene predicted gene 16001
Cpgi16602 5 124111513 to 124112948 1435 CpG island CpG island 16602
Tssr53314 5 124111785 to 124111795 10 - TSS region transcription start site region 53314
Tssr53315 5 124111799 to 124111854 55 - TSS region transcription start site region 53315
Tssr53316 5 124111862 to 124111881 19 - TSS region transcription start site region 53316
Tssr53317 5 124112219 to 124112246 27 - TSS region transcription start site region 53317
Ogfod2 5 124112297 to 124115483 3186 + protein coding gene 2-oxoglutarate and iron-dependent oxygenase domain containing 2
Tssr48844 5 124112298 to 124112351 53 + TSS region transcription start site region 48844
Cpgi16603 5 124115839 to 124116998 1159 CpG island CpG island 16603
Tssr48845 5 124116072 to 124116083 11 + TSS region transcription start site region 48845
Tssr48846 5 124116085 to 124116124 39 + TSS region transcription start site region 48846
Arl6ip4 5 124116108 to 124118195 2087 + protein coding gene ADP-ribosylation factor-like 6 interacting protein 4
Pitpnm2 5 124118690 to 124249760 131070 - protein coding gene phosphatidylinositol transfer protein, membrane-associated 2
Tssr53318 5 124152790 to 124152827 37 - TSS region transcription start site region 53318
Tssr53319 5 124152831 to 124152840 9 - TSS region transcription start site region 53319
Tssr53320 5 124171643 to 124171649 6 - TSS region transcription start site region 53320
Tssr53321 5 124172568 to 124172570 2 - TSS region transcription start site region 53321
Tssr48847 5 124175395 to 124175408 13 + TSS region transcription start site region 48847
Tssr48848 5 124175414 to 124175430 16 + TSS region transcription start site region 48848
Tssr48849 5 124185503 to 124185513 10 + TSS region transcription start site region 48849
Tssr1632 5 124186651 to 124186676 25 + TSS region transcription start site region 1632
Tssr53322 5 124187003 to 124187060 57 - TSS region transcription start site region 53322
Tssr48850 5 124187132 to 124187137 5 + TSS region transcription start site region 48850
Tssr53323 5 124187150 to 124187225 75 - TSS region transcription start site region 53323
Tssr53324 5 124189688 to 124189697 9 - TSS region transcription start site region 53324
Tssr53325 5 124189714 to 124189732 18 - TSS region transcription start site region 53325
Tssr53326 5 124189736 to 124189740 4 - TSS region transcription start site region 53326
Pitpnm2os2 5 124194818 to 124199115 4297 + antisense lncRNA gene phosphatidylinositol transfer protein, membrane-associated 2, opposite strand 2
Tssr48851 5 124194860 to 124194869 9 + TSS region transcription start site region 48851
Tssr48852 5 124194894 to 124194912 18 + TSS region transcription start site region 48852
Tssr53327 5 124204219 to 124204253 34 - TSS region transcription start site region 53327
Tssr53328 5 124209457 to 124209463 6 - TSS region transcription start site region 53328
Tssr48853 5 124229722 to 124229734 12 + TSS region transcription start site region 48853
Pitpnm2os1 5 124229725 to 124237137 7412 + antisense lncRNA gene phosphatidylinositol transfer protein, membrane-associated 2, opposite strand 1
Tssr48854 5 124229746 to 124229757 11 + TSS region transcription start site region 48854
Tssr48855 5 124233002 to 124233025 23 + TSS region transcription start site region 48855
Gm42425 5 124237724 to 124238435 711 + antisense lncRNA gene predicted gene 42425
Tssr53329 5 124248078 to 124248126 48 - TSS region transcription start site region 53329
Tssr53330 5 124248373 to 124248399 26 - TSS region transcription start site region 53330
Cpgi16604 5 124248786 to 124250354 1568 CpG island CpG island 16604
Tssr53331 5 124249711 to 124249722 11 - TSS region transcription start site region 53331
Tssr53332 5 124249758 to 124249782 24 - TSS region transcription start site region 53332
Tssr53333 5 124249784 to 124249827 43 - TSS region transcription start site region 53333
Tssr53334 5 124249829 to 124249860 31 - TSS region transcription start site region 53334
Tssr53335 5 124249910 to 124249929 19 - TSS region transcription start site region 53335
Mphosph9 5 124250959 to 124327972 77013 - protein coding gene M-phase phosphoprotein 9
Gm23171 5 124257763 to 124258026 263 + unclassified non-coding RNA gene predicted gene, 23171
Tssr53336 5 124263390 to 124263417 27 - TSS region transcription start site region 53336
Gm43339 5 124278307 to 124279912 1605 - unclassified gene predicted gene 43339
Gm43340 5 124300484 to 124301827 1343 - unclassified gene predicted gene 43340
Cpgi16605 5 124327289 to 124328611 1322 CpG island CpG island 16605
Tssr48856 5 124327631 to 124327642 11 + TSS region transcription start site region 48856
Tssr53337 5 124327812 to 124327879 67 - TSS region transcription start site region 53337
Tssr53338 5 124327883 to 124327894 11 - TSS region transcription start site region 53338
Tssr48857 5 124328083 to 124328094 11 + TSS region transcription start site region 48857
2810006K23Rik 5 124328089 to 124341844 13755 + protein coding gene RIKEN cDNA 2810006K23 gene
Tssr48858 5 124328131 to 124328188 57 + TSS region transcription start site region 48858
Tssr48859 5 124328195 to 124328209 14 + TSS region transcription start site region 48859
Tssr53339 5 124329944 to 124329957 13 - TSS region transcription start site region 53339
Cdk2ap1 5 124345439 to 124354628 9189 - protein coding gene CDK2 (cyclin-dependent kinase 2)-associated protein 1
Cpgi16606 5 124349237 to 124349481 244 CpG island CpG island 16606
Tssr53340 5 124350912 to 124350924 12 - TSS region transcription start site region 53340
Tssr53341 5 124351183 to 124351224 41 - TSS region transcription start site region 53341
Tssr53342 5 124351225 to 124351255 30 - TSS region transcription start site region 53342
Tssr53343 5 124351267 to 124351286 19 - TSS region transcription start site region 53343
Tssr53344 5 124352257 to 124352302 45 - TSS region transcription start site region 53344
Cpgi16607 5 124352646 to 124352821 175 CpG island CpG island 16607
Cpgi16608 5 124353222 to 124354880 1658 CpG island CpG island 16608
Tssr53345 5 124354539 to 124354554 15 - TSS region transcription start site region 53345
Tssr53346 5 124354756 to 124354777 21 - TSS region transcription start site region 53346
Tssr53347 5 124354805 to 124354821 16 - TSS region transcription start site region 53347
Sbno1 5 124368702 to 124425951 57249 - protein coding gene strawberry notch 1
Tssr53348 5 124373265 to 124373269 4 - TSS region transcription start site region 53348
Tssr53349 5 124392023 to 124392040 17 - TSS region transcription start site region 53349
Tssr53350 5 124392605 to 124392644 39 - TSS region transcription start site region 53350
Tssr53351 5 124393824 to 124393856 32 - TSS region transcription start site region 53351
Tssr53352 5 124396034 to 124396048 14 - TSS region transcription start site region 53352
Tssr53353 5 124400072 to 124400108 36 - TSS region transcription start site region 53353
Cpgi16609 5 124424607 to 124426282 1675 CpG island CpG island 16609
Gm37415 5 124424697 to 124426879 2182 + unclassified gene predicted gene, 37415
Gm27486 5 124425510 to 124425589 79 - miRNA gene predicted gene, 27486
Tssr53354 5 124425548 to 124425566 18 - TSS region transcription start site region 53354
Tssr53355 5 124425575 to 124425601 26 - TSS region transcription start site region 53355
Tssr53356 5 124425907 to 124425946 39 - TSS region transcription start site region 53356
Tssr53357 5 124425949 to 124426001 52 - TSS region transcription start site region 53357
Tssr53358 5 124439539 to 124439593 54 - TSS region transcription start site region 53358
Cpgi16610 5 124439596 to 124440508 912 CpG island CpG island 16610
Tssr48860 5 124439891 to 124439991 100 + TSS region transcription start site region 48860
Kmt5a 5 124439930 to 124462308 22378 + protein coding gene lysine methyltransferase 5A
Tssr48861 5 124444468 to 124444471 3 + TSS region transcription start site region 48861
Cpgi16611 5 124444753 to 124446641 1888 CpG island CpG island 16611
Tssr53359 5 124445377 to 124445391 14 - TSS region transcription start site region 53359
Tssr48862 5 124445377 to 124445388 11 + TSS region transcription start site region 48862
Tssr48863 5 124445461 to 124445532 71 + TSS region transcription start site region 48863
Tssr48864 5 124446236 to 124446248 12 + TSS region transcription start site region 48864
Tssr48865 5 124446689 to 124446717 28 + TSS region transcription start site region 48865
Tssr48866 5 124446727 to 124446747 20 + TSS region transcription start site region 48866
Tssr48867 5 124446748 to 124446776 28 + TSS region transcription start site region 48867
Tssr48868 5 124446787 to 124446814 27 + TSS region transcription start site region 48868
Tssr48869 5 124446864 to 124446879 15 + TSS region transcription start site region 48869
Tssr48870 5 124446900 to 124446911 11 + TSS region transcription start site region 48870
Tssr48871 5 124446939 to 124446963 24 + TSS region transcription start site region 48871
Tssr48872 5 124446972 to 124446983 11 + TSS region transcription start site region 48872
Tssr48873 5 124447009 to 124447018 9 + TSS region transcription start site region 48873
Tssr48874 5 124447026 to 124447037 11 + TSS region transcription start site region 48874
Tssr48875 5 124447147 to 124447158 11 + TSS region transcription start site region 48875
Tssr48876 5 124447162 to 124447177 15 + TSS region transcription start site region 48876
Tssr48877 5 124447185 to 124447196 11 + TSS region transcription start site region 48877
Tssr48878 5 124450164 to 124450173 9 + TSS region transcription start site region 48878
Tssr48879 5 124450174 to 124450184 10 + TSS region transcription start site region 48879
Tssr48880 5 124450190 to 124450203 13 + TSS region transcription start site region 48880
Tssr48881 5 124450372 to 124450384 12 + TSS region transcription start site region 48881
Tssr48882 5 124450405 to 124450424 19 + TSS region transcription start site region 48882
Tssr48883 5 124450428 to 124450437 9 + TSS region transcription start site region 48883
Tssr48884 5 124450803 to 124450829 26 + TSS region transcription start site region 48884
Tssr48885 5 124450831 to 124450848 17 + TSS region transcription start site region 48885
Tssr1633 5 124450850 to 124450859 9 + TSS region transcription start site region 1633
Tssr48886 5 124451149 to 124451167 18 + TSS region transcription start site region 48886
Tssr48887 5 124451176 to 124451194 18 + TSS region transcription start site region 48887
Tssr48888 5 124451212 to 124451223 11 + TSS region transcription start site region 48888
Tssr1634 5 124451296 to 124451343 47 + TSS region transcription start site region 1634
Cpgi16612 5 124453256 to 124453562 306 CpG island CpG island 16612
Tssr48889 5 124459886 to 124459901 15 + TSS region transcription start site region 48889
Tssr48890 5 124460671 to 124460706 35 + TSS region transcription start site region 48890
Tssr48891 5 124460756 to 124460768 12 + TSS region transcription start site region 48891
Rilpl2 5 124463265 to 124478235 14970 - protein coding gene Rab interacting lysosomal protein-like 2
Gm15621 5 124472427 to 124472790 363 + pseudogene predicted gene 15621
Tssr48892 5 124475489 to 124475568 79 + TSS region transcription start site region 48892
Tssr53360 5 124476437 to 124476446 9 - TSS region transcription start site region 53360
Tssr53361 5 124477465 to 124477491 26 - TSS region transcription start site region 53361
Cpgi16613 5 124477744 to 124478476 732 CpG island CpG island 16613
Tssr48893 5 124478085 to 124478089 4 + TSS region transcription start site region 48893
Tssr53362 5 124478271 to 124478282 11 - TSS region transcription start site region 53362
Tssr53363 5 124478284 to 124478295 11 - TSS region transcription start site region 53363
Tssr53364 5 124478301 to 124478328 27 - TSS region transcription start site region 53364
Tssr53365 5 124478330 to 124478384 54 - TSS region transcription start site region 53365
Tssr48894 5 124479038 to 124479054 16 + TSS region transcription start site region 48894
Tssr53366 5 124480038 to 124480063 25 - TSS region transcription start site region 53366
Cpgi16614 5 124483090 to 124483715 625 CpG island CpG island 16614
Tssr48895 5 124483128 to 124483158 30 + TSS region transcription start site region 48895
Snrnp35 5 124483134 to 124491124 7990 + protein coding gene small nuclear ribonucleoprotein 35 (U11/U12)
Tssr48896 5 124483165 to 124483185 20 + TSS region transcription start site region 48896
Tssr48897 5 124483471 to 124483491 20 + TSS region transcription start site region 48897
Tssr48898 5 124483509 to 124483520 11 + TSS region transcription start site region 48898
Tssr48899 5 124483553 to 124483592 39 + TSS region transcription start site region 48899
Rilpl1 5 124493080 to 124531391 38311 - protein coding gene Rab interacting lysosomal protein-like 1
Tssr53367 5 124496970 to 124497007 37 - TSS region transcription start site region 53367
Tssr48900 5 124497100 to 124497140 40 + TSS region transcription start site region 48900
Tssr48901 5 124522641 to 124522646 5 + TSS region transcription start site region 48901
Gm6046 5 124522643 to 124523121 478 + pseudogene predicted gene 6046
Cpgi16615 5 124530267 to 124531851 1584 CpG island CpG island 16615
Tssr48902 5 124530687 to 124530741 54 + TSS region transcription start site region 48902
Tssr53368 5 124530983 to 124531040 57 - TSS region transcription start site region 53368
Gm43034 5 124531133 to 124532496 1363 + unclassified gene predicted gene 43034
Tssr53369 5 124531194 to 124531232 38 - TSS region transcription start site region 53369
Tssr53370 5 124531291 to 124531307 16 - TSS region transcription start site region 53370
Tssr53371 5 124531308 to 124531393 85 - TSS region transcription start site region 53371
Cpgi16616 5 124536875 to 124537160 285 CpG island CpG island 16616
Cpgi16617 5 124540330 to 124541630 1300 CpG island CpG island 16617
Tssr48903 5 124540743 to 124540786 43 + TSS region transcription start site region 48903
Tmed2 5 124540791 to 124550503 9712 + protein coding gene transmembrane p24 trafficking protein 2
Tssr53372 5 124541081 to 124541095 14 - TSS region transcription start site region 53372
Tssr48904 5 124541296 to 124541315 19 + TSS region transcription start site region 48904
Cpgi16618 5 124552553 to 124553264 711 CpG island CpG island 16618
Tssr53373 5 124552804 to 124552834 30 - TSS region transcription start site region 53373
Tssr48905 5 124552845 to 124552903 58 + TSS region transcription start site region 48905
Ddx55 5 124552864 to 124569660 16796 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 55
Tssr48906 5 124552905 to 124552918 13 + TSS region transcription start site region 48906
Tssr53374 5 124557085 to 124557095 10 - TSS region transcription start site region 53374
Eif2b1 5 124570214 to 124579131 8917 - protein coding gene eukaryotic translation initiation factor 2B, subunit 1 (alpha)
Cpgi16619 5 124578684 to 124579694 1010 CpG island CpG island 16619
Tssr53375 5 124579023 to 124579044 21 - TSS region transcription start site region 53375
Tssr53376 5 124579045 to 124579075 30 - TSS region transcription start site region 53376
Tssr53377 5 124579083 to 124579095 12 - TSS region transcription start site region 53377
Tssr48907 5 124579115 to 124579124 9 + TSS region transcription start site region 48907
Tssr48908 5 124579134 to 124579184 50 + TSS region transcription start site region 48908
Gtf2h3 5 124579148 to 124597680 18532 + protein coding gene general transcription factor IIH, polypeptide 3
Cpgi16620 5 124598555 to 124599290 735 CpG island CpG island 16620
Tctn2 5 124598749 to 124627738 28989 + protein coding gene tectonic family member 2
Tssr48909 5 124598752 to 124598798 46 + TSS region transcription start site region 48909
D5Mit279 5 124601675 to 124601797 122 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 279
Cpgi16621 5 124628892 to 124629820 928 CpG island CpG island 16621
Tssr48910 5 124629050 to 124629097 47 + TSS region transcription start site region 48910
Atp6v0a2 5 124629052 to 124724455 95403 + protein coding gene ATPase, H+ transporting, lysosomal V0 subunit A2
Tssr48911 5 124629099 to 124629113 14 + TSS region transcription start site region 48911
Tssr48912 5 124637488 to 124637501 13 + TSS region transcription start site region 48912
Tssr1635 5 124637504 to 124637524 20 + TSS region transcription start site region 1635
Gm24854 5 124717077 to 124717174 97 - snRNA gene predicted gene, 24854
4930404A12Rik 5 124721997 to 124725079 3082 - antisense lncRNA gene RIKEN cDNA 4930404A12 gene
Cpgi16622 5 124724945 to 124725514 569 CpG island CpG island 16622
Dnah10 5 124725085 to 124834308 109223 + protein coding gene dynein, axonemal, heavy chain 10
Tssr48913 5 124725119 to 124725137 18 + TSS region transcription start site region 48913