Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:124089722-124369734

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Abcb9 5 124061857 to 124095967 34110 - protein coding gene ATP-binding cassette, sub-family B (MDR/TAP), member 9
Cpgi16600 5 124089900 to 124090262 362 CpG island CpG island 16600
Cpgi16601 5 124095161 to 124096139 978 CpG island CpG island 16601
Tssr53312 5 124095734 to 124095745 11 - TSS region transcription start site region 53312
Tssr53313 5 124095749 to 124095820 71 - TSS region transcription start site region 53313
D5Mit369 5 124100052 to 124100176 124 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 369
Skts4 5 124100176 to 89271017 -34829159 QTL skin tumor susceptibility 4
Gm16001 5 124111109 to 124112264 1155 - lincRNA gene predicted gene 16001
Cpgi16602 5 124111513 to 124112948 1435 CpG island CpG island 16602
Tssr53314 5 124111785 to 124111795 10 - TSS region transcription start site region 53314
Tssr53315 5 124111799 to 124111854 55 - TSS region transcription start site region 53315
Tssr53316 5 124111862 to 124111881 19 - TSS region transcription start site region 53316
Tssr53317 5 124112219 to 124112246 27 - TSS region transcription start site region 53317
Ogfod2 5 124112297 to 124115483 3186 + protein coding gene 2-oxoglutarate and iron-dependent oxygenase domain containing 2
Tssr48844 5 124112298 to 124112351 53 + TSS region transcription start site region 48844
Cpgi16603 5 124115839 to 124116998 1159 CpG island CpG island 16603
Tssr48845 5 124116072 to 124116083 11 + TSS region transcription start site region 48845
Tssr48846 5 124116085 to 124116124 39 + TSS region transcription start site region 48846
Arl6ip4 5 124116108 to 124118195 2087 + protein coding gene ADP-ribosylation factor-like 6 interacting protein 4
Pitpnm2 5 124118690 to 124249760 131070 - protein coding gene phosphatidylinositol transfer protein, membrane-associated 2
Tssr53318 5 124152790 to 124152827 37 - TSS region transcription start site region 53318
Tssr53319 5 124152831 to 124152840 9 - TSS region transcription start site region 53319
Tssr53320 5 124171643 to 124171649 6 - TSS region transcription start site region 53320
Tssr53321 5 124172568 to 124172570 2 - TSS region transcription start site region 53321
Tssr48847 5 124175395 to 124175408 13 + TSS region transcription start site region 48847
Tssr48848 5 124175414 to 124175430 16 + TSS region transcription start site region 48848
Tssr48849 5 124185503 to 124185513 10 + TSS region transcription start site region 48849
Tssr1632 5 124186651 to 124186676 25 + TSS region transcription start site region 1632
Tssr53322 5 124187003 to 124187060 57 - TSS region transcription start site region 53322
Tssr48850 5 124187132 to 124187137 5 + TSS region transcription start site region 48850
Tssr53323 5 124187150 to 124187225 75 - TSS region transcription start site region 53323
Tssr53324 5 124189688 to 124189697 9 - TSS region transcription start site region 53324
Tssr53325 5 124189714 to 124189732 18 - TSS region transcription start site region 53325
Tssr53326 5 124189736 to 124189740 4 - TSS region transcription start site region 53326
Pitpnm2os2 5 124194818 to 124199115 4297 + antisense lncRNA gene phosphatidylinositol transfer protein, membrane-associated 2, opposite strand 2
Tssr48851 5 124194860 to 124194869 9 + TSS region transcription start site region 48851
Tssr48852 5 124194894 to 124194912 18 + TSS region transcription start site region 48852
Tssr53327 5 124204219 to 124204253 34 - TSS region transcription start site region 53327
Tssr53328 5 124209457 to 124209463 6 - TSS region transcription start site region 53328
Tssr48853 5 124229722 to 124229734 12 + TSS region transcription start site region 48853
Pitpnm2os1 5 124229725 to 124237137 7412 + antisense lncRNA gene phosphatidylinositol transfer protein, membrane-associated 2, opposite strand 1
Tssr48854 5 124229746 to 124229757 11 + TSS region transcription start site region 48854
Tssr48855 5 124233002 to 124233025 23 + TSS region transcription start site region 48855
Gm42425 5 124237724 to 124238435 711 + antisense lncRNA gene predicted gene 42425
Tssr53329 5 124248078 to 124248126 48 - TSS region transcription start site region 53329
Tssr53330 5 124248373 to 124248399 26 - TSS region transcription start site region 53330
Cpgi16604 5 124248786 to 124250354 1568 CpG island CpG island 16604
Tssr53331 5 124249711 to 124249722 11 - TSS region transcription start site region 53331
Tssr53332 5 124249758 to 124249782 24 - TSS region transcription start site region 53332
Tssr53333 5 124249784 to 124249827 43 - TSS region transcription start site region 53333
Tssr53334 5 124249829 to 124249860 31 - TSS region transcription start site region 53334
Tssr53335 5 124249910 to 124249929 19 - TSS region transcription start site region 53335
Mphosph9 5 124250959 to 124327972 77013 - protein coding gene M-phase phosphoprotein 9
Gm23171 5 124257763 to 124258026 263 + unclassified non-coding RNA gene predicted gene, 23171
Tssr53336 5 124263390 to 124263417 27 - TSS region transcription start site region 53336
Gm43339 5 124278307 to 124279912 1605 - unclassified gene predicted gene 43339
Gm43340 5 124300484 to 124301827 1343 - unclassified gene predicted gene 43340
Cpgi16605 5 124327289 to 124328611 1322 CpG island CpG island 16605
Tssr48856 5 124327631 to 124327642 11 + TSS region transcription start site region 48856
Tssr53337 5 124327812 to 124327879 67 - TSS region transcription start site region 53337
Tssr53338 5 124327883 to 124327894 11 - TSS region transcription start site region 53338
Tssr48857 5 124328083 to 124328094 11 + TSS region transcription start site region 48857
2810006K23Rik 5 124328089 to 124341844 13755 + protein coding gene RIKEN cDNA 2810006K23 gene
Tssr48858 5 124328131 to 124328188 57 + TSS region transcription start site region 48858
Tssr48859 5 124328195 to 124328209 14 + TSS region transcription start site region 48859
Tssr53339 5 124329944 to 124329957 13 - TSS region transcription start site region 53339
Cdk2ap1 5 124345439 to 124354628 9189 - protein coding gene CDK2 (cyclin-dependent kinase 2)-associated protein 1
Cpgi16606 5 124349237 to 124349481 244 CpG island CpG island 16606
Tssr53340 5 124350912 to 124350924 12 - TSS region transcription start site region 53340
Tssr53341 5 124351183 to 124351224 41 - TSS region transcription start site region 53341
Tssr53342 5 124351225 to 124351255 30 - TSS region transcription start site region 53342
Tssr53343 5 124351267 to 124351286 19 - TSS region transcription start site region 53343
Tssr53344 5 124352257 to 124352302 45 - TSS region transcription start site region 53344
Cpgi16607 5 124352646 to 124352821 175 CpG island CpG island 16607
Cpgi16608 5 124353222 to 124354880 1658 CpG island CpG island 16608
Tssr53345 5 124354539 to 124354554 15 - TSS region transcription start site region 53345
Tssr53346 5 124354756 to 124354777 21 - TSS region transcription start site region 53346
Tssr53347 5 124354805 to 124354821 16 - TSS region transcription start site region 53347
Sbno1 5 124368702 to 124425951 57249 - protein coding gene strawberry notch 1