Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:123662287-124002294

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Clip1 5 123577794 to 123684361 106567 - protein coding gene CAP-GLY domain containing linker protein 1
Tssr53254 5 123666682 to 123666695 13 - TSS region transcription start site region 53254
Tssr53255 5 123666701 to 123666709 8 - TSS region transcription start site region 53255
Tssr53256 5 123666713 to 123666726 13 - TSS region transcription start site region 53256
Tssr53257 5 123670996 to 123671034 38 - TSS region transcription start site region 53257
Tssr53258 5 123671052 to 123671063 11 - TSS region transcription start site region 53258
Tssr53259 5 123671077 to 123671091 14 - TSS region transcription start site region 53259
Tssr53260 5 123671097 to 123671109 12 - TSS region transcription start site region 53260
Tssr53261 5 123671111 to 123671130 19 - TSS region transcription start site region 53261
Tssr53262 5 123671150 to 123671172 22 - TSS region transcription start site region 53262
Gm42651 5 123682130 to 123683468 1338 - unclassified gene predicted gene 42651
Cpgi16590 5 123683455 to 123685035 1580 CpG island CpG island 16590
Tssr53263 5 123684275 to 123684286 11 - TSS region transcription start site region 53263
Tssr53264 5 123684289 to 123684379 90 - TSS region transcription start site region 53264
Gm43797 5 123684775 to 123685306 531 + unclassified gene predicted gene 43797
Tssr53265 5 123693478 to 123693481 3 - TSS region transcription start site region 53265
Zcchc8 5 123698302 to 123721044 22742 - protein coding gene zinc finger, CCHC domain containing 8
Tssr53266 5 123700064 to 123700072 8 - TSS region transcription start site region 53266
Tssr1630 5 123714044 to 123714046 2 + TSS region transcription start site region 1630
Tssr48803 5 123714893 to 123714900 7 + TSS region transcription start site region 48803
Cpgi16591 5 123720166 to 123721164 998 CpG island CpG island 16591
Tssr53267 5 123720933 to 123720960 27 - TSS region transcription start site region 53267
Tssr53268 5 123720962 to 123720973 11 - TSS region transcription start site region 53268
Tssr53269 5 123721007 to 123721062 55 - TSS region transcription start site region 53269
Tssr53270 5 123721063 to 123721074 11 - TSS region transcription start site region 53270
Tssr53271 5 123721090 to 123721112 22 - TSS region transcription start site region 53271
Gm19601 5 123725147 to 123725589 442 + pseudogene predicted gene, 19601
Rsrc2 5 123728426 to 123749414 20988 - protein coding gene arginine/serine-rich coiled-coil 2
Tssr53272 5 123736613 to 123736638 25 - TSS region transcription start site region 53272
Tssr53273 5 123745071 to 123745120 49 - TSS region transcription start site region 53273
Cpgi16592 5 123749094 to 123749894 800 CpG island CpG island 16592
Tssr53274 5 123749374 to 123749391 17 - TSS region transcription start site region 53274
Tssr53275 5 123749393 to 123749418 25 - TSS region transcription start site region 53275
Tssr48804 5 123749696 to 123749735 39 + TSS region transcription start site region 48804
Kntc1 5 123749716 to 123821593 71877 + protein coding gene kinetochore associated 1
Tssr48805 5 123809640 to 123809643 3 + TSS region transcription start site region 48805
Tssr1631 5 123832287 to 123832294 7 - TSS region transcription start site region 1631
Cpgi16593 5 123847978 to 123848257 279 CpG island CpG island 16593
Hcar2 5 123863570 to 123865499 1929 - protein coding gene hydroxycarboxylic acid receptor 2
Tssr53276 5 123865444 to 123865451 7 - TSS region transcription start site region 53276
Tssr53277 5 123865462 to 123865473 11 - TSS region transcription start site region 53277
Tssr53278 5 123865483 to 123865488 5 - TSS region transcription start site region 53278
Tssr53279 5 123865491 to 123865518 27 - TSS region transcription start site region 53279
Hcar1 5 123876736 to 123880020 3284 - protein coding gene hydrocarboxylic acid receptor 1
Tssr53280 5 123879992 to 123880012 20 - TSS region transcription start site region 53280
Tssr53281 5 123880030 to 123880039 9 - TSS region transcription start site region 53281
D5Mit1005 5 123880820 to 123880953 133 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 1005
Tssr53282 5 123891789 to 123891808 19 - TSS region transcription start site region 53282
Tssr48806 5 123893816 to 123893827 11 + TSS region transcription start site region 48806
Cpgi16594 5 123906871 to 123907874 1003 CpG island CpG island 16594
Tssr48807 5 123907186 to 123907197 11 + TSS region transcription start site region 48807
Tssr48808 5 123907199 to 123907210 11 + TSS region transcription start site region 48808
Tssr48809 5 123907239 to 123907292 53 + TSS region transcription start site region 48809
Denr 5 123907269 to 123928832 21563 + protein coding gene density-regulated protein
Tssr48810 5 123907294 to 123907315 21 + TSS region transcription start site region 48810
Tssr48811 5 123907376 to 123907387 11 + TSS region transcription start site region 48811
Tssr48812 5 123907522 to 123907560 38 + TSS region transcription start site region 48812
Tssr48813 5 123907562 to 123907571 9 + TSS region transcription start site region 48813
Tssr48814 5 123907572 to 123907587 15 + TSS region transcription start site region 48814
Tssr48815 5 123907596 to 123907607 11 + TSS region transcription start site region 48815
Tssr48816 5 123907622 to 123907633 11 + TSS region transcription start site region 48816
Tssr48817 5 123908082 to 123908114 32 + TSS region transcription start site region 48817
Tssr48818 5 123908178 to 123908188 10 + TSS region transcription start site region 48818
Tssr48819 5 123909090 to 123909108 18 + TSS region transcription start site region 48819
Tssr48820 5 123909124 to 123909133 9 + TSS region transcription start site region 48820
Tssr53283 5 123910493 to 123910537 44 - TSS region transcription start site region 53283
Tssr48821 5 123914986 to 123914992 6 + TSS region transcription start site region 48821
Tssr48822 5 123915093 to 123915107 14 + TSS region transcription start site region 48822
Gm43518 5 123927418 to 123938388 10970 + protein coding gene predicted gene 43518
Cpgi16595 5 123930390 to 123931093 703 CpG island CpG island 16595
Tssr48823 5 123930665 to 123930674 9 + TSS region transcription start site region 48823
Tssr48824 5 123930675 to 123930718 43 + TSS region transcription start site region 48824
Ccdc62 5 123930679 to 123969895 39216 + protein coding gene coiled-coil domain containing 62
Tssr48825 5 123930723 to 123930754 31 + TSS region transcription start site region 48825
Cpgi16596 5 123973098 to 123974373 1275 CpG island CpG island 16596
Tssr48826 5 123973603 to 123973666 63 + TSS region transcription start site region 48826
Hip1r 5 123973609 to 124003215 29606 + protein coding gene huntingtin interacting protein 1 related
Tssr48827 5 123973675 to 123973697 22 + TSS region transcription start site region 48827
Tssr48828 5 123973717 to 123973733 16 + TSS region transcription start site region 48828
Gm46922 5 123973868 to 123975478 1610 + lncRNA gene predicted gene, 46922
Tssr48829 5 123974419 to 123974423 4 + TSS region transcription start site region 48829
D5Mit160 5 123993857 to 123994000 143 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 160
Mir7032 5 123996852 to 123996930 78 + miRNA gene microRNA 7032
Tssr48830 5 123997362 to 123997374 12 + TSS region transcription start site region 48830
Cpgi16597 5 123997697 to 123998142 445 CpG island CpG island 16597
Tssr48831 5 123998675 to 123998720 45 + TSS region transcription start site region 48831