Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:123562596-124252607

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199 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vps33a 5 123528659 to 123573038 44379 - protein coding gene VPS33A CORVET/HOPS core subunit
Cpgi16589 5 123572638 to 123573189 551 CpG island CpG island 16589
Tssr53246 5 123572976 to 123573031 55 - TSS region transcription start site region 53246
Tssr53247 5 123573035 to 123573040 5 - TSS region transcription start site region 53247
Clip1 5 123577794 to 123684361 106567 - protein coding gene CAP-GLY domain containing linker protein 1
Tssr53248 5 123603675 to 123603706 31 - TSS region transcription start site region 53248
Tssr53249 5 123612153 to 123612178 25 - TSS region transcription start site region 53249
Tssr53250 5 123621846 to 123621850 4 - TSS region transcription start site region 53250
Gm24840 5 123628201 to 123628347 146 + snRNA gene predicted gene, 24840
Tssr48800 5 123630014 to 123630032 18 + TSS region transcription start site region 48800
Tssr53251 5 123637838 to 123637847 9 - TSS region transcription start site region 53251
Tssr48801 5 123641759 to 123641768 9 + TSS region transcription start site region 48801
Tssr53252 5 123661651 to 123661663 12 - TSS region transcription start site region 53252
Tssr53253 5 123661664 to 123661690 26 - TSS region transcription start site region 53253
Tssr48802 5 123662225 to 123662231 6 + TSS region transcription start site region 48802
Tssr53254 5 123666682 to 123666695 13 - TSS region transcription start site region 53254
Tssr53255 5 123666701 to 123666709 8 - TSS region transcription start site region 53255
Tssr53256 5 123666713 to 123666726 13 - TSS region transcription start site region 53256
Tssr53257 5 123670996 to 123671034 38 - TSS region transcription start site region 53257
Tssr53258 5 123671052 to 123671063 11 - TSS region transcription start site region 53258
Tssr53259 5 123671077 to 123671091 14 - TSS region transcription start site region 53259
Tssr53260 5 123671097 to 123671109 12 - TSS region transcription start site region 53260
Tssr53261 5 123671111 to 123671130 19 - TSS region transcription start site region 53261
Tssr53262 5 123671150 to 123671172 22 - TSS region transcription start site region 53262
Gm42651 5 123682130 to 123683468 1338 - unclassified gene predicted gene 42651
Cpgi16590 5 123683455 to 123685035 1580 CpG island CpG island 16590
Tssr53263 5 123684275 to 123684286 11 - TSS region transcription start site region 53263
Tssr53264 5 123684289 to 123684379 90 - TSS region transcription start site region 53264
Gm43797 5 123684775 to 123685306 531 + unclassified gene predicted gene 43797
Tssr53265 5 123693478 to 123693481 3 - TSS region transcription start site region 53265
Zcchc8 5 123698302 to 123721044 22742 - protein coding gene zinc finger, CCHC domain containing 8
Tssr53266 5 123700064 to 123700072 8 - TSS region transcription start site region 53266
Tssr1630 5 123714044 to 123714046 2 + TSS region transcription start site region 1630
Tssr48803 5 123714893 to 123714900 7 + TSS region transcription start site region 48803
Cpgi16591 5 123720166 to 123721164 998 CpG island CpG island 16591
Tssr53267 5 123720933 to 123720960 27 - TSS region transcription start site region 53267
Tssr53268 5 123720962 to 123720973 11 - TSS region transcription start site region 53268
Tssr53269 5 123721007 to 123721062 55 - TSS region transcription start site region 53269
Tssr53270 5 123721063 to 123721074 11 - TSS region transcription start site region 53270
Tssr53271 5 123721090 to 123721112 22 - TSS region transcription start site region 53271
Gm19601 5 123725147 to 123725589 442 + pseudogene predicted gene, 19601
Rsrc2 5 123728426 to 123749414 20988 - protein coding gene arginine/serine-rich coiled-coil 2
Tssr53272 5 123736613 to 123736638 25 - TSS region transcription start site region 53272
Tssr53273 5 123745071 to 123745120 49 - TSS region transcription start site region 53273
Cpgi16592 5 123749094 to 123749894 800 CpG island CpG island 16592
Tssr53274 5 123749374 to 123749391 17 - TSS region transcription start site region 53274
Tssr53275 5 123749393 to 123749418 25 - TSS region transcription start site region 53275
Tssr48804 5 123749696 to 123749735 39 + TSS region transcription start site region 48804
Kntc1 5 123749716 to 123821593 71877 + protein coding gene kinetochore associated 1
Tssr48805 5 123809640 to 123809643 3 + TSS region transcription start site region 48805
Tssr1631 5 123832287 to 123832294 7 - TSS region transcription start site region 1631
Cpgi16593 5 123847978 to 123848257 279 CpG island CpG island 16593
Hcar2 5 123863570 to 123865499 1929 - protein coding gene hydroxycarboxylic acid receptor 2
Tssr53276 5 123865444 to 123865451 7 - TSS region transcription start site region 53276
Tssr53277 5 123865462 to 123865473 11 - TSS region transcription start site region 53277
Tssr53278 5 123865483 to 123865488 5 - TSS region transcription start site region 53278
Tssr53279 5 123865491 to 123865518 27 - TSS region transcription start site region 53279
Hcar1 5 123876736 to 123880020 3284 - protein coding gene hydrocarboxylic acid receptor 1
Tssr53280 5 123879992 to 123880012 20 - TSS region transcription start site region 53280
Tssr53281 5 123880030 to 123880039 9 - TSS region transcription start site region 53281
D5Mit1005 5 123880820 to 123880953 133 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 1005
Tssr53282 5 123891789 to 123891808 19 - TSS region transcription start site region 53282
Tssr48806 5 123893816 to 123893827 11 + TSS region transcription start site region 48806
Cpgi16594 5 123906871 to 123907874 1003 CpG island CpG island 16594
Tssr48807 5 123907186 to 123907197 11 + TSS region transcription start site region 48807
Tssr48808 5 123907199 to 123907210 11 + TSS region transcription start site region 48808
Tssr48809 5 123907239 to 123907292 53 + TSS region transcription start site region 48809
Denr 5 123907269 to 123928832 21563 + protein coding gene density-regulated protein
Tssr48810 5 123907294 to 123907315 21 + TSS region transcription start site region 48810
Tssr48811 5 123907376 to 123907387 11 + TSS region transcription start site region 48811
Tssr48812 5 123907522 to 123907560 38 + TSS region transcription start site region 48812
Tssr48813 5 123907562 to 123907571 9 + TSS region transcription start site region 48813
Tssr48814 5 123907572 to 123907587 15 + TSS region transcription start site region 48814
Tssr48815 5 123907596 to 123907607 11 + TSS region transcription start site region 48815
Tssr48816 5 123907622 to 123907633 11 + TSS region transcription start site region 48816
Tssr48817 5 123908082 to 123908114 32 + TSS region transcription start site region 48817
Tssr48818 5 123908178 to 123908188 10 + TSS region transcription start site region 48818
Tssr48819 5 123909090 to 123909108 18 + TSS region transcription start site region 48819
Tssr48820 5 123909124 to 123909133 9 + TSS region transcription start site region 48820
Tssr53283 5 123910493 to 123910537 44 - TSS region transcription start site region 53283
Tssr48821 5 123914986 to 123914992 6 + TSS region transcription start site region 48821
Tssr48822 5 123915093 to 123915107 14 + TSS region transcription start site region 48822
Gm43518 5 123927418 to 123938388 10970 + protein coding gene predicted gene 43518
Cpgi16595 5 123930390 to 123931093 703 CpG island CpG island 16595
Tssr48823 5 123930665 to 123930674 9 + TSS region transcription start site region 48823
Tssr48824 5 123930675 to 123930718 43 + TSS region transcription start site region 48824
Ccdc62 5 123930679 to 123969895 39216 + protein coding gene coiled-coil domain containing 62
Tssr48825 5 123930723 to 123930754 31 + TSS region transcription start site region 48825
Cpgi16596 5 123973098 to 123974373 1275 CpG island CpG island 16596
Tssr48826 5 123973603 to 123973666 63 + TSS region transcription start site region 48826
Hip1r 5 123973609 to 124003215 29606 + protein coding gene huntingtin interacting protein 1 related
Tssr48827 5 123973675 to 123973697 22 + TSS region transcription start site region 48827
Tssr48828 5 123973717 to 123973733 16 + TSS region transcription start site region 48828
Gm46922 5 123973868 to 123975478 1610 + lncRNA gene predicted gene, 46922
Tssr48829 5 123974419 to 123974423 4 + TSS region transcription start site region 48829
D5Mit160 5 123993857 to 123994000 143 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 160
Mir7032 5 123996852 to 123996930 78 + miRNA gene microRNA 7032
Tssr48830 5 123997362 to 123997374 12 + TSS region transcription start site region 48830
Cpgi16597 5 123997697 to 123998142 445 CpG island CpG island 16597
Tssr48831 5 123998675 to 123998720 45 + TSS region transcription start site region 48831
Vps37b 5 124004641 to 124032260 27619 - protein coding gene vacuolar protein sorting 37B
Gm37939 5 124004648 to 124006151 1503 + unclassified gene predicted gene, 37939
Tssr48832 5 124004988 to 124005008 20 + TSS region transcription start site region 48832
Tssr53284 5 124005617 to 124005648 31 - TSS region transcription start site region 53284
Tssr53285 5 124006115 to 124006154 39 - TSS region transcription start site region 53285
Tssr48833 5 124006467 to 124006490 23 + TSS region transcription start site region 48833
Tssr53286 5 124006471 to 124006494 23 - TSS region transcription start site region 53286
Tssr53287 5 124006551 to 124006569 18 - TSS region transcription start site region 53287
Tssr53288 5 124010712 to 124010718 6 - TSS region transcription start site region 53288
Tssr53289 5 124010790 to 124010803 13 - TSS region transcription start site region 53289
Tssr53290 5 124031018 to 124031022 4 - TSS region transcription start site region 53290
Cpgi16598 5 124031582 to 124032569 987 CpG island CpG island 16598
Tssr53291 5 124032214 to 124032290 76 - TSS region transcription start site region 53291
Gm34086 5 124032358 to 124046037 13679 + lincRNA gene predicted gene, 34086
Tssr48834 5 124032544 to 124032572 28 + TSS region transcription start site region 48834
Tssr53292 5 124034528 to 124034539 11 - TSS region transcription start site region 53292
Tssr53293 5 124034549 to 124034559 10 - TSS region transcription start site region 53293
Tssr53294 5 124034582 to 124034589 7 - TSS region transcription start site region 53294
Tssr53295 5 124034595 to 124034607 12 - TSS region transcription start site region 53295
Tssr53296 5 124034622 to 124034625 3 - TSS region transcription start site region 53296
Tssr48835 5 124034792 to 124034802 10 + TSS region transcription start site region 48835
Gm43661 5 124035201 to 124052352 17151 - lincRNA gene predicted gene 43661
Tssr53297 5 124035689 to 124035714 25 - TSS region transcription start site region 53297
Tssr53298 5 124035735 to 124035752 17 - TSS region transcription start site region 53298
Tssr53299 5 124035768 to 124035773 5 - TSS region transcription start site region 53299
Tssr53300 5 124035790 to 124035802 12 - TSS region transcription start site region 53300
Tssr53301 5 124035807 to 124035815 8 - TSS region transcription start site region 53301
Tssr48836 5 124036257 to 124036261 4 + TSS region transcription start site region 48836
Tssr53302 5 124052046 to 124052074 28 - TSS region transcription start site region 53302
Tssr53303 5 124052213 to 124052227 14 - TSS region transcription start site region 53303
Abcb9 5 124061857 to 124095967 34110 - protein coding gene ATP-binding cassette, sub-family B (MDR/TAP), member 9
Tssr48837 5 124070642 to 124070667 25 + TSS region transcription start site region 48837
Tssr53304 5 124075095 to 124075115 20 - TSS region transcription start site region 53304
Tssr48838 5 124075304 to 124075326 22 + TSS region transcription start site region 48838
Tssr48839 5 124075344 to 124075375 31 + TSS region transcription start site region 48839
Tssr53305 5 124075737 to 124075748 11 - TSS region transcription start site region 53305
Tssr53306 5 124075752 to 124075794 42 - TSS region transcription start site region 53306
Tssr48840 5 124076001 to 124076009 8 + TSS region transcription start site region 48840
Tssr48841 5 124076086 to 124076100 14 + TSS region transcription start site region 48841
Tssr48842 5 124076113 to 124076136 23 + TSS region transcription start site region 48842
Tssr48843 5 124076914 to 124076922 8 + TSS region transcription start site region 48843
Tssr53307 5 124077281 to 124077325 44 - TSS region transcription start site region 53307
Tssr53308 5 124079072 to 124079083 11 - TSS region transcription start site region 53308
Cpgi16599 5 124079969 to 124080170 201 CpG island CpG island 16599
Tssr53309 5 124080076 to 124080102 26 - TSS region transcription start site region 53309
Tssr53310 5 124083097 to 124083129 32 - TSS region transcription start site region 53310
Tssr53311 5 124083463 to 124083487 24 - TSS region transcription start site region 53311
Cpgi16600 5 124089900 to 124090262 362 CpG island CpG island 16600
Cpgi16601 5 124095161 to 124096139 978 CpG island CpG island 16601
Tssr53312 5 124095734 to 124095745 11 - TSS region transcription start site region 53312
Tssr53313 5 124095749 to 124095820 71 - TSS region transcription start site region 53313
D5Mit369 5 124100052 to 124100176 124 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 369
Skts4 5 124100176 to 89271017 -34829159 QTL skin tumor susceptibility 4
Gm16001 5 124111109 to 124112264 1155 - lincRNA gene predicted gene 16001
Cpgi16602 5 124111513 to 124112948 1435 CpG island CpG island 16602
Tssr53314 5 124111785 to 124111795 10 - TSS region transcription start site region 53314
Tssr53315 5 124111799 to 124111854 55 - TSS region transcription start site region 53315
Tssr53316 5 124111862 to 124111881 19 - TSS region transcription start site region 53316
Tssr53317 5 124112219 to 124112246 27 - TSS region transcription start site region 53317
Ogfod2 5 124112297 to 124115483 3186 + protein coding gene 2-oxoglutarate and iron-dependent oxygenase domain containing 2
Tssr48844 5 124112298 to 124112351 53 + TSS region transcription start site region 48844
Cpgi16603 5 124115839 to 124116998 1159 CpG island CpG island 16603
Tssr48845 5 124116072 to 124116083 11 + TSS region transcription start site region 48845
Tssr48846 5 124116085 to 124116124 39 + TSS region transcription start site region 48846
Arl6ip4 5 124116108 to 124118195 2087 + protein coding gene ADP-ribosylation factor-like 6 interacting protein 4
Pitpnm2 5 124118690 to 124249760 131070 - protein coding gene phosphatidylinositol transfer protein, membrane-associated 2
Tssr53318 5 124152790 to 124152827 37 - TSS region transcription start site region 53318
Tssr53319 5 124152831 to 124152840 9 - TSS region transcription start site region 53319
Tssr53320 5 124171643 to 124171649 6 - TSS region transcription start site region 53320
Tssr53321 5 124172568 to 124172570 2 - TSS region transcription start site region 53321
Tssr48847 5 124175395 to 124175408 13 + TSS region transcription start site region 48847
Tssr48848 5 124175414 to 124175430 16 + TSS region transcription start site region 48848
Tssr48849 5 124185503 to 124185513 10 + TSS region transcription start site region 48849
Tssr1632 5 124186651 to 124186676 25 + TSS region transcription start site region 1632
Tssr53322 5 124187003 to 124187060 57 - TSS region transcription start site region 53322
Tssr48850 5 124187132 to 124187137 5 + TSS region transcription start site region 48850
Tssr53323 5 124187150 to 124187225 75 - TSS region transcription start site region 53323
Tssr53324 5 124189688 to 124189697 9 - TSS region transcription start site region 53324
Tssr53325 5 124189714 to 124189732 18 - TSS region transcription start site region 53325
Tssr53326 5 124189736 to 124189740 4 - TSS region transcription start site region 53326
Pitpnm2os2 5 124194818 to 124199115 4297 + antisense lncRNA gene phosphatidylinositol transfer protein, membrane-associated 2, opposite strand 2
Tssr48851 5 124194860 to 124194869 9 + TSS region transcription start site region 48851
Tssr48852 5 124194894 to 124194912 18 + TSS region transcription start site region 48852
Tssr53327 5 124204219 to 124204253 34 - TSS region transcription start site region 53327
Tssr53328 5 124209457 to 124209463 6 - TSS region transcription start site region 53328
Tssr48853 5 124229722 to 124229734 12 + TSS region transcription start site region 48853
Pitpnm2os1 5 124229725 to 124237137 7412 + antisense lncRNA gene phosphatidylinositol transfer protein, membrane-associated 2, opposite strand 1
Tssr48854 5 124229746 to 124229757 11 + TSS region transcription start site region 48854
Tssr48855 5 124233002 to 124233025 23 + TSS region transcription start site region 48855
Gm42425 5 124237724 to 124238435 711 + antisense lncRNA gene predicted gene 42425
Tssr53329 5 124248078 to 124248126 48 - TSS region transcription start site region 53329
Tssr53330 5 124248373 to 124248399 26 - TSS region transcription start site region 53330
Cpgi16604 5 124248786 to 124250354 1568 CpG island CpG island 16604
Tssr53331 5 124249711 to 124249722 11 - TSS region transcription start site region 53331
Tssr53332 5 124249758 to 124249782 24 - TSS region transcription start site region 53332
Tssr53333 5 124249784 to 124249827 43 - TSS region transcription start site region 53333
Tssr53334 5 124249829 to 124249860 31 - TSS region transcription start site region 53334
Tssr53335 5 124249910 to 124249929 19 - TSS region transcription start site region 53335
Mphosph9 5 124250959 to 124327972 77013 - protein coding gene M-phase phosphoprotein 9