Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:123357082-123680488

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
repro2 5 119806972 to 123412074 3605102 heritable phenotypic marker reproductive mutant 2, JAX Reproductive Mutagenesis Program
Bcl7a 5 123344448 to 123374083 29635 + protein coding gene B cell CLL/lymphoma 7A
Gm23458 5 123360832 to 123361000 168 + snRNA gene predicted gene, 23458
5830487J09Rik 5 123366472 to 123368919 2447 + unclassified gene RIKEN cDNA 5830487J09 gene
Cpgi16583 5 123373244 to 123373606 362 CpG island CpG island 16583
Cpgi16584 5 123381941 to 123382165 224 CpG island CpG island 16584
Gm15747 5 123393649 to 123397957 4308 - antisense lncRNA gene predicted gene 15747
Cpgi16585 5 123394392 to 123395608 1216 CpG island CpG island 16585
Tssr53238 5 123394635 to 123394638 3 - TSS region transcription start site region 53238
Tssr48790 5 123394730 to 123394739 9 + TSS region transcription start site region 48790
Tssr48791 5 123394782 to 123394826 44 + TSS region transcription start site region 48791
Mlxip 5 123394798 to 123457932 63134 + protein coding gene MLX interacting protein
Gm42907 5 123397240 to 123399387 2147 + unclassified gene predicted gene 42907
Tssr53239 5 123397956 to 123397991 35 - TSS region transcription start site region 53239
Gm42908 5 123401072 to 123401941 869 + unclassified gene predicted gene 42908
Tssr48792 5 123401074 to 123401084 10 + TSS region transcription start site region 48792
D5Mit413 5 123402149 to 123402297 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 413
Gm43813 5 123406487 to 123411864 5377 + unclassified non-coding RNA gene predicted gene 43813
D5Mit65 5 123411936 to 123412074 138 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 65
Tssr48793 5 123414938 to 123414945 7 + TSS region transcription start site region 48793
Tssr48794 5 123429049 to 123429055 6 + TSS region transcription start site region 48794
Tssr48795 5 123442290 to 123442304 14 + TSS region transcription start site region 48795
Tssr48796 5 123445797 to 123445812 15 + TSS region transcription start site region 48796
Tssr48797 5 123462471 to 123462508 37 + TSS region transcription start site region 48797
Rpl31-ps6 5 123466509 to 123466886 377 + pseudogene ribosomal protein L31, pseudogene 6
Il31 5 123480149 to 123482634 2485 - protein coding gene interleukin 31
Tssr53240 5 123482569 to 123482598 29 - TSS region transcription start site region 53240
Tssr53241 5 123482609 to 123482627 18 - TSS region transcription start site region 53241
Tssr53242 5 123482633 to 123482644 11 - TSS region transcription start site region 53242
Cpgi16586 5 123489185 to 123489492 307 CpG island CpG island 16586
Tssr48798 5 123489301 to 123489329 28 + TSS region transcription start site region 48798
Lrrc43 5 123489305 to 123508205 18900 + protein coding gene leucine rich repeat containing 43
Cpgi16587 5 123507978 to 123509012 1034 CpG island CpG island 16587
Gm15751 5 123508395 to 123514011 5616 + sense overlapping lncRNA gene predicted gene 15751
Tssr48799 5 123508476 to 123508491 15 + TSS region transcription start site region 48799
B3gnt4 5 123510460 to 123511882 1422 + protein coding gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4
Diablo 5 123511330 to 123524164 12834 - protein coding gene diablo, IAP-binding mitochondrial protein
Gm49027 5 123512082 to 123525488 13406 - protein coding gene predicted gene, 49027
Gm24682 5 123518231 to 123518367 136 + snoRNA gene predicted gene, 24682
Mir7647 5 123522637 to 123522695 58 - miRNA gene microRNA 7647
Cpgi16588 5 123523405 to 123524861 1456 CpG island CpG island 16588
Tssr53243 5 123524124 to 123524167 43 - TSS region transcription start site region 53243
Tssr53244 5 123525392 to 123525424 32 - TSS region transcription start site region 53244
Tssr53245 5 123525435 to 123525465 30 - TSS region transcription start site region 53245
Vps33a 5 123528659 to 123573038 44379 - protein coding gene VPS33A CORVET/HOPS core subunit
1700015O03Rik 5 123543791 to 123544359 568 unclassified gene RIKEN cDNA 1700015O03 gene
Gm43133 5 123561525 to 123561987 462 - unclassified gene predicted gene 43133
Cpgi16589 5 123572638 to 123573189 551 CpG island CpG island 16589
Tssr53246 5 123572976 to 123573031 55 - TSS region transcription start site region 53246
Tssr53247 5 123573035 to 123573040 5 - TSS region transcription start site region 53247
Clip1 5 123577794 to 123684361 106567 - protein coding gene CAP-GLY domain containing linker protein 1
Tssr53248 5 123603675 to 123603706 31 - TSS region transcription start site region 53248
Tssr53249 5 123612153 to 123612178 25 - TSS region transcription start site region 53249
Tssr53250 5 123621846 to 123621850 4 - TSS region transcription start site region 53250
Gm24840 5 123628201 to 123628347 146 + snRNA gene predicted gene, 24840
Tssr48800 5 123630014 to 123630032 18 + TSS region transcription start site region 48800
Tssr53251 5 123637838 to 123637847 9 - TSS region transcription start site region 53251
Tssr48801 5 123641759 to 123641768 9 + TSS region transcription start site region 48801
Tssr53252 5 123661651 to 123661663 12 - TSS region transcription start site region 53252
Tssr53253 5 123661664 to 123661690 26 - TSS region transcription start site region 53253
Tssr48802 5 123662225 to 123662231 6 + TSS region transcription start site region 48802
Tssr53254 5 123666682 to 123666695 13 - TSS region transcription start site region 53254
Tssr53255 5 123666701 to 123666709 8 - TSS region transcription start site region 53255
Tssr53256 5 123666713 to 123666726 13 - TSS region transcription start site region 53256
Tssr53257 5 123670996 to 123671034 38 - TSS region transcription start site region 53257
Tssr53258 5 123671052 to 123671063 11 - TSS region transcription start site region 53258
Tssr53259 5 123671077 to 123671091 14 - TSS region transcription start site region 53259
Tssr53260 5 123671097 to 123671109 12 - TSS region transcription start site region 53260
Tssr53261 5 123671111 to 123671130 19 - TSS region transcription start site region 53261
Tssr53262 5 123671150 to 123671172 22 - TSS region transcription start site region 53262