Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:123336936-123487074

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
repro2 5 119806972 to 123412074 3605102 heritable phenotypic marker reproductive mutant 2, JAX Reproductive Mutagenesis Program
Gm15860 5 123334313 to 123345138 10825 - antisense lncRNA gene predicted gene 15860
Tssr48785 5 123343956 to 123343970 14 + TSS region transcription start site region 48785
Cpgi16582 5 123343979 to 123345849 1870 CpG island CpG island 16582
Tssr48786 5 123344336 to 123344347 11 + TSS region transcription start site region 48786
Tssr48787 5 123344440 to 123344576 136 + TSS region transcription start site region 48787
Bcl7a 5 123344448 to 123374083 29635 + protein coding gene B cell CLL/lymphoma 7A
Tssr48788 5 123344582 to 123344629 47 + TSS region transcription start site region 48788
Tssr48789 5 123344666 to 123344675 9 + TSS region transcription start site region 48789
Tssr1629 5 123344929 to 123344933 4 + TSS region transcription start site region 1629
Tssr53237 5 123345855 to 123345860 5 - TSS region transcription start site region 53237
Gm23458 5 123360832 to 123361000 168 + snRNA gene predicted gene, 23458
5830487J09Rik 5 123366472 to 123368919 2447 + unclassified gene RIKEN cDNA 5830487J09 gene
Cpgi16583 5 123373244 to 123373606 362 CpG island CpG island 16583
Cpgi16584 5 123381941 to 123382165 224 CpG island CpG island 16584
Gm15747 5 123393649 to 123397957 4308 - antisense lncRNA gene predicted gene 15747
Cpgi16585 5 123394392 to 123395608 1216 CpG island CpG island 16585
Tssr53238 5 123394635 to 123394638 3 - TSS region transcription start site region 53238
Tssr48790 5 123394730 to 123394739 9 + TSS region transcription start site region 48790
Tssr48791 5 123394782 to 123394826 44 + TSS region transcription start site region 48791
Mlxip 5 123394798 to 123457932 63134 + protein coding gene MLX interacting protein
Gm42907 5 123397240 to 123399387 2147 + unclassified gene predicted gene 42907
Tssr53239 5 123397956 to 123397991 35 - TSS region transcription start site region 53239
Gm42908 5 123401072 to 123401941 869 + unclassified gene predicted gene 42908
Tssr48792 5 123401074 to 123401084 10 + TSS region transcription start site region 48792
D5Mit413 5 123402149 to 123402297 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 413
Gm43813 5 123406487 to 123411864 5377 + unclassified non-coding RNA gene predicted gene 43813
D5Mit65 5 123411936 to 123412074 138 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 65
Tssr48793 5 123414938 to 123414945 7 + TSS region transcription start site region 48793
Tssr48794 5 123429049 to 123429055 6 + TSS region transcription start site region 48794
Tssr48795 5 123442290 to 123442304 14 + TSS region transcription start site region 48795
Tssr48796 5 123445797 to 123445812 15 + TSS region transcription start site region 48796
Tssr48797 5 123462471 to 123462508 37 + TSS region transcription start site region 48797
Rpl31-ps6 5 123466509 to 123466886 377 + pseudogene ribosomal protein L31, pseudogene 6
Il31 5 123480149 to 123482634 2485 - protein coding gene interleukin 31
Tssr53240 5 123482569 to 123482598 29 - TSS region transcription start site region 53240
Tssr53241 5 123482609 to 123482627 18 - TSS region transcription start site region 53241
Tssr53242 5 123482633 to 123482644 11 - TSS region transcription start site region 53242