Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:123163604-123403753

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm26745 5 123047373 to 123230871 183498 - lincRNA gene predicted gene, 26745
Setd1b 5 123142193 to 123168629 26436 + protein coding gene SET domain containing 1B
Cpgi16579 5 123165792 to 123166351 559 CpG island CpG island 16579
Tssr48770 5 123167369 to 123167392 23 + TSS region transcription start site region 48770
Tssr48771 5 123167577 to 123167598 21 + TSS region transcription start site region 48771
Hpd 5 123171807 to 123182686 10879 - protein coding gene 4-hydroxyphenylpyruvic acid dioxygenase
Tssr53218 5 123171961 to 123171987 26 - TSS region transcription start site region 53218
Tssr53219 5 123172019 to 123172026 7 - TSS region transcription start site region 53219
Tssr53220 5 123172082 to 123172089 7 - TSS region transcription start site region 53220
Tssr53221 5 123172246 to 123172265 19 - TSS region transcription start site region 53221
Tssr53222 5 123172280 to 123172289 9 - TSS region transcription start site region 53222
Tssr53223 5 123174397 to 123174413 16 - TSS region transcription start site region 53223
Tssr53224 5 123174432 to 123174460 28 - TSS region transcription start site region 53224
Tssr53225 5 123175922 to 123175969 47 - TSS region transcription start site region 53225
Tssr48772 5 123176097 to 123176134 37 + TSS region transcription start site region 48772
Tssr53226 5 123176184 to 123176204 20 - TSS region transcription start site region 53226
Tssr48773 5 123177522 to 123177559 37 + TSS region transcription start site region 48773
Tssr53227 5 123178218 to 123178228 10 - TSS region transcription start site region 53227
Tssr53228 5 123178261 to 123178272 11 - TSS region transcription start site region 53228
Tssr53229 5 123180686 to 123180698 12 - TSS region transcription start site region 53229
Tssr53230 5 123181447 to 123181458 11 - TSS region transcription start site region 53230
Tssr53231 5 123181467 to 123181479 12 - TSS region transcription start site region 53231
Tssr53232 5 123181495 to 123181500 5 - TSS region transcription start site region 53232
Tssr53233 5 123181637 to 123181660 23 - TSS region transcription start site region 53233
Tssr53234 5 123181693 to 123181699 6 - TSS region transcription start site region 53234
Tssr53235 5 123182704 to 123182731 27 - TSS region transcription start site region 53235
Gm43409 5 123188701 to 123191588 2887 - lincRNA gene predicted gene 43409
Cpgi16580 5 123228104 to 123228707 603 CpG island CpG island 16580
Psmd9 5 123228190 to 123250126 21936 + protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
Tssr48774 5 123228216 to 123228227 11 + TSS region transcription start site region 48774
Tssr48775 5 123228238 to 123228301 63 + TSS region transcription start site region 48775
Tssr48776 5 123239676 to 123239718 42 + TSS region transcription start site region 48776
Tssr1628 5 123248697 to 123248728 31 + TSS region transcription start site region 1628
Cpgi16581 5 123251928 to 123252269 341 CpG island CpG island 16581
Gm42025 5 123252015 to 123253852 1837 + lncRNA gene predicted gene, 42025
Tssr48777 5 123252087 to 123252136 49 + TSS region transcription start site region 48777
Tssr48778 5 123253666 to 123253692 26 + TSS region transcription start site region 48778
Wdr66 5 123253856 to 123327484 73628 + protein coding gene WD repeat domain 66
Rpl35a-ps6 5 123255481 to 123255813 332 - pseudogene ribosomal protein L35A, pseudogene 6
Tssr48779 5 123273748 to 123273751 3 + TSS region transcription start site region 48779
D5Mit137 5 123283604 to 123283753 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 137
Gm15857 5 123293638 to 123310324 16686 - antisense lncRNA gene predicted gene 15857
Tssr48780 5 123302402 to 123302411 9 + TSS region transcription start site region 48780
Tssr48781 5 123302413 to 123302426 13 + TSS region transcription start site region 48781
Tssr48782 5 123302497 to 123302508 11 + TSS region transcription start site region 48782
Tssr53236 5 123310349 to 123310360 11 - TSS region transcription start site region 53236
Tssr48783 5 123310499 to 123310522 23 + TSS region transcription start site region 48783
Tssr48784 5 123310533 to 123310544 11 + TSS region transcription start site region 48784
Gm15860 5 123334313 to 123345138 10825 - antisense lncRNA gene predicted gene 15860
Tssr48785 5 123343956 to 123343970 14 + TSS region transcription start site region 48785
Cpgi16582 5 123343979 to 123345849 1870 CpG island CpG island 16582
Tssr48786 5 123344336 to 123344347 11 + TSS region transcription start site region 48786
Tssr48787 5 123344440 to 123344576 136 + TSS region transcription start site region 48787
Bcl7a 5 123344448 to 123374083 29635 + protein coding gene B cell CLL/lymphoma 7A
Tssr48788 5 123344582 to 123344629 47 + TSS region transcription start site region 48788
Tssr48789 5 123344666 to 123344675 9 + TSS region transcription start site region 48789
Tssr1629 5 123344929 to 123344933 4 + TSS region transcription start site region 1629
Tssr53237 5 123345855 to 123345860 5 - TSS region transcription start site region 53237
Gm23458 5 123360832 to 123361000 168 + snRNA gene predicted gene, 23458
5830487J09Rik 5 123366472 to 123368919 2447 + unclassified gene RIKEN cDNA 5830487J09 gene
Cpgi16583 5 123373244 to 123373606 362 CpG island CpG island 16583
Cpgi16584 5 123381941 to 123382165 224 CpG island CpG island 16584
Gm15747 5 123393649 to 123397957 4308 - antisense lncRNA gene predicted gene 15747
Cpgi16585 5 123394392 to 123395608 1216 CpG island CpG island 16585
Tssr53238 5 123394635 to 123394638 3 - TSS region transcription start site region 53238
Tssr48790 5 123394730 to 123394739 9 + TSS region transcription start site region 48790
Tssr48791 5 123394782 to 123394826 44 + TSS region transcription start site region 48791
Mlxip 5 123394798 to 123457932 63134 + protein coding gene MLX interacting protein
Gm42907 5 123397240 to 123399387 2147 + unclassified gene predicted gene 42907
Tssr53239 5 123397956 to 123397991 35 - TSS region transcription start site region 53239
Gm42908 5 123401072 to 123401941 869 + unclassified gene predicted gene 42908
Tssr48792 5 123401074 to 123401084 10 + TSS region transcription start site region 48792
D5Mit413 5 123402149 to 123402297 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 413