Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:123161789-124621808

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437 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
repro2 5 119806972 to 123412074 3605102 heritable phenotypic marker reproductive mutant 2, JAX Reproductive Mutagenesis Program
Gm26745 5 123047373 to 123230871 183498 - lincRNA gene predicted gene, 26745
Setd1b 5 123142193 to 123168629 26436 + protein coding gene SET domain containing 1B
Cpgi16579 5 123165792 to 123166351 559 CpG island CpG island 16579
Tssr48770 5 123167369 to 123167392 23 + TSS region transcription start site region 48770
Tssr48771 5 123167577 to 123167598 21 + TSS region transcription start site region 48771
Hpd 5 123171807 to 123182686 10879 - protein coding gene 4-hydroxyphenylpyruvic acid dioxygenase
Tssr53218 5 123171961 to 123171987 26 - TSS region transcription start site region 53218
Tssr53219 5 123172019 to 123172026 7 - TSS region transcription start site region 53219
Tssr53220 5 123172082 to 123172089 7 - TSS region transcription start site region 53220
Tssr53221 5 123172246 to 123172265 19 - TSS region transcription start site region 53221
Tssr53222 5 123172280 to 123172289 9 - TSS region transcription start site region 53222
Tssr53223 5 123174397 to 123174413 16 - TSS region transcription start site region 53223
Tssr53224 5 123174432 to 123174460 28 - TSS region transcription start site region 53224
Tssr53225 5 123175922 to 123175969 47 - TSS region transcription start site region 53225
Tssr48772 5 123176097 to 123176134 37 + TSS region transcription start site region 48772
Tssr53226 5 123176184 to 123176204 20 - TSS region transcription start site region 53226
Tssr48773 5 123177522 to 123177559 37 + TSS region transcription start site region 48773
Tssr53227 5 123178218 to 123178228 10 - TSS region transcription start site region 53227
Tssr53228 5 123178261 to 123178272 11 - TSS region transcription start site region 53228
Tssr53229 5 123180686 to 123180698 12 - TSS region transcription start site region 53229
Tssr53230 5 123181447 to 123181458 11 - TSS region transcription start site region 53230
Tssr53231 5 123181467 to 123181479 12 - TSS region transcription start site region 53231
Tssr53232 5 123181495 to 123181500 5 - TSS region transcription start site region 53232
Tssr53233 5 123181637 to 123181660 23 - TSS region transcription start site region 53233
Tssr53234 5 123181693 to 123181699 6 - TSS region transcription start site region 53234
Tssr53235 5 123182704 to 123182731 27 - TSS region transcription start site region 53235
Gm43409 5 123188701 to 123191588 2887 - lincRNA gene predicted gene 43409
Cpgi16580 5 123228104 to 123228707 603 CpG island CpG island 16580
Psmd9 5 123228190 to 123250126 21936 + protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
Tssr48774 5 123228216 to 123228227 11 + TSS region transcription start site region 48774
Tssr48775 5 123228238 to 123228301 63 + TSS region transcription start site region 48775
Tssr48776 5 123239676 to 123239718 42 + TSS region transcription start site region 48776
Tssr1628 5 123248697 to 123248728 31 + TSS region transcription start site region 1628
Cpgi16581 5 123251928 to 123252269 341 CpG island CpG island 16581
Gm42025 5 123252015 to 123253852 1837 + lncRNA gene predicted gene, 42025
Tssr48777 5 123252087 to 123252136 49 + TSS region transcription start site region 48777
Tssr48778 5 123253666 to 123253692 26 + TSS region transcription start site region 48778
Wdr66 5 123253856 to 123327484 73628 + protein coding gene WD repeat domain 66
Rpl35a-ps6 5 123255481 to 123255813 332 - pseudogene ribosomal protein L35A, pseudogene 6
Tssr48779 5 123273748 to 123273751 3 + TSS region transcription start site region 48779
D5Mit137 5 123283604 to 123283753 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 137
Gm15857 5 123293638 to 123310324 16686 - antisense lncRNA gene predicted gene 15857
Tssr48780 5 123302402 to 123302411 9 + TSS region transcription start site region 48780
Tssr48781 5 123302413 to 123302426 13 + TSS region transcription start site region 48781
Tssr48782 5 123302497 to 123302508 11 + TSS region transcription start site region 48782
Tssr53236 5 123310349 to 123310360 11 - TSS region transcription start site region 53236
Tssr48783 5 123310499 to 123310522 23 + TSS region transcription start site region 48783
Tssr48784 5 123310533 to 123310544 11 + TSS region transcription start site region 48784
Gm15860 5 123334313 to 123345138 10825 - antisense lncRNA gene predicted gene 15860
Tssr48785 5 123343956 to 123343970 14 + TSS region transcription start site region 48785
Cpgi16582 5 123343979 to 123345849 1870 CpG island CpG island 16582
Tssr48786 5 123344336 to 123344347 11 + TSS region transcription start site region 48786
Tssr48787 5 123344440 to 123344576 136 + TSS region transcription start site region 48787
Bcl7a 5 123344448 to 123374083 29635 + protein coding gene B cell CLL/lymphoma 7A
Tssr48788 5 123344582 to 123344629 47 + TSS region transcription start site region 48788
Tssr48789 5 123344666 to 123344675 9 + TSS region transcription start site region 48789
Tssr1629 5 123344929 to 123344933 4 + TSS region transcription start site region 1629
Tssr53237 5 123345855 to 123345860 5 - TSS region transcription start site region 53237
Gm23458 5 123360832 to 123361000 168 + snRNA gene predicted gene, 23458
5830487J09Rik 5 123366472 to 123368919 2447 + unclassified gene RIKEN cDNA 5830487J09 gene
Cpgi16583 5 123373244 to 123373606 362 CpG island CpG island 16583
Cpgi16584 5 123381941 to 123382165 224 CpG island CpG island 16584
Gm15747 5 123393649 to 123397957 4308 - antisense lncRNA gene predicted gene 15747
Cpgi16585 5 123394392 to 123395608 1216 CpG island CpG island 16585
Tssr53238 5 123394635 to 123394638 3 - TSS region transcription start site region 53238
Tssr48790 5 123394730 to 123394739 9 + TSS region transcription start site region 48790
Tssr48791 5 123394782 to 123394826 44 + TSS region transcription start site region 48791
Mlxip 5 123394798 to 123457932 63134 + protein coding gene MLX interacting protein
Gm42907 5 123397240 to 123399387 2147 + unclassified gene predicted gene 42907
Tssr53239 5 123397956 to 123397991 35 - TSS region transcription start site region 53239
Gm42908 5 123401072 to 123401941 869 + unclassified gene predicted gene 42908
Tssr48792 5 123401074 to 123401084 10 + TSS region transcription start site region 48792
D5Mit413 5 123402149 to 123402297 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 413
Gm43813 5 123406487 to 123411864 5377 + unclassified non-coding RNA gene predicted gene 43813
D5Mit65 5 123411936 to 123412074 138 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 65
Tssr48793 5 123414938 to 123414945 7 + TSS region transcription start site region 48793
Tssr48794 5 123429049 to 123429055 6 + TSS region transcription start site region 48794
Tssr48795 5 123442290 to 123442304 14 + TSS region transcription start site region 48795
Tssr48796 5 123445797 to 123445812 15 + TSS region transcription start site region 48796
Tssr48797 5 123462471 to 123462508 37 + TSS region transcription start site region 48797
Rpl31-ps6 5 123466509 to 123466886 377 + pseudogene ribosomal protein L31, pseudogene 6
Il31 5 123480149 to 123482634 2485 - protein coding gene interleukin 31
Tssr53240 5 123482569 to 123482598 29 - TSS region transcription start site region 53240
Tssr53241 5 123482609 to 123482627 18 - TSS region transcription start site region 53241
Tssr53242 5 123482633 to 123482644 11 - TSS region transcription start site region 53242
Cpgi16586 5 123489185 to 123489492 307 CpG island CpG island 16586
Tssr48798 5 123489301 to 123489329 28 + TSS region transcription start site region 48798
Lrrc43 5 123489305 to 123508205 18900 + protein coding gene leucine rich repeat containing 43
Cpgi16587 5 123507978 to 123509012 1034 CpG island CpG island 16587
Gm15751 5 123508395 to 123514011 5616 + sense overlapping lncRNA gene predicted gene 15751
Tssr48799 5 123508476 to 123508491 15 + TSS region transcription start site region 48799
B3gnt4 5 123510460 to 123511882 1422 + protein coding gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4
Diablo 5 123511330 to 123524164 12834 - protein coding gene diablo, IAP-binding mitochondrial protein
Gm49027 5 123512082 to 123525488 13406 - protein coding gene predicted gene, 49027
Gm24682 5 123518231 to 123518367 136 + snoRNA gene predicted gene, 24682
Mir7647 5 123522637 to 123522695 58 - miRNA gene microRNA 7647
Cpgi16588 5 123523405 to 123524861 1456 CpG island CpG island 16588
Tssr53243 5 123524124 to 123524167 43 - TSS region transcription start site region 53243
Tssr53244 5 123525392 to 123525424 32 - TSS region transcription start site region 53244
Tssr53245 5 123525435 to 123525465 30 - TSS region transcription start site region 53245
Vps33a 5 123528659 to 123573038 44379 - protein coding gene VPS33A CORVET/HOPS core subunit
1700015O03Rik 5 123543791 to 123544359 568 unclassified gene RIKEN cDNA 1700015O03 gene
Gm43133 5 123561525 to 123561987 462 - unclassified gene predicted gene 43133
Cpgi16589 5 123572638 to 123573189 551 CpG island CpG island 16589
Tssr53246 5 123572976 to 123573031 55 - TSS region transcription start site region 53246
Tssr53247 5 123573035 to 123573040 5 - TSS region transcription start site region 53247
Clip1 5 123577794 to 123684361 106567 - protein coding gene CAP-GLY domain containing linker protein 1
Tssr53248 5 123603675 to 123603706 31 - TSS region transcription start site region 53248
Tssr53249 5 123612153 to 123612178 25 - TSS region transcription start site region 53249
Tssr53250 5 123621846 to 123621850 4 - TSS region transcription start site region 53250
Gm24840 5 123628201 to 123628347 146 + snRNA gene predicted gene, 24840
Tssr48800 5 123630014 to 123630032 18 + TSS region transcription start site region 48800
Tssr53251 5 123637838 to 123637847 9 - TSS region transcription start site region 53251
Tssr48801 5 123641759 to 123641768 9 + TSS region transcription start site region 48801
Tssr53252 5 123661651 to 123661663 12 - TSS region transcription start site region 53252
Tssr53253 5 123661664 to 123661690 26 - TSS region transcription start site region 53253
Tssr48802 5 123662225 to 123662231 6 + TSS region transcription start site region 48802
Tssr53254 5 123666682 to 123666695 13 - TSS region transcription start site region 53254
Tssr53255 5 123666701 to 123666709 8 - TSS region transcription start site region 53255
Tssr53256 5 123666713 to 123666726 13 - TSS region transcription start site region 53256
Tssr53257 5 123670996 to 123671034 38 - TSS region transcription start site region 53257
Tssr53258 5 123671052 to 123671063 11 - TSS region transcription start site region 53258
Tssr53259 5 123671077 to 123671091 14 - TSS region transcription start site region 53259
Tssr53260 5 123671097 to 123671109 12 - TSS region transcription start site region 53260
Tssr53261 5 123671111 to 123671130 19 - TSS region transcription start site region 53261
Tssr53262 5 123671150 to 123671172 22 - TSS region transcription start site region 53262
Gm42651 5 123682130 to 123683468 1338 - unclassified gene predicted gene 42651
Cpgi16590 5 123683455 to 123685035 1580 CpG island CpG island 16590
Tssr53263 5 123684275 to 123684286 11 - TSS region transcription start site region 53263
Tssr53264 5 123684289 to 123684379 90 - TSS region transcription start site region 53264
Gm43797 5 123684775 to 123685306 531 + unclassified gene predicted gene 43797
Tssr53265 5 123693478 to 123693481 3 - TSS region transcription start site region 53265
Zcchc8 5 123698302 to 123721044 22742 - protein coding gene zinc finger, CCHC domain containing 8
Tssr53266 5 123700064 to 123700072 8 - TSS region transcription start site region 53266
Tssr1630 5 123714044 to 123714046 2 + TSS region transcription start site region 1630
Tssr48803 5 123714893 to 123714900 7 + TSS region transcription start site region 48803
Cpgi16591 5 123720166 to 123721164 998 CpG island CpG island 16591
Tssr53267 5 123720933 to 123720960 27 - TSS region transcription start site region 53267
Tssr53268 5 123720962 to 123720973 11 - TSS region transcription start site region 53268
Tssr53269 5 123721007 to 123721062 55 - TSS region transcription start site region 53269
Tssr53270 5 123721063 to 123721074 11 - TSS region transcription start site region 53270
Tssr53271 5 123721090 to 123721112 22 - TSS region transcription start site region 53271
Gm19601 5 123725147 to 123725589 442 + pseudogene predicted gene, 19601
Rsrc2 5 123728426 to 123749414 20988 - protein coding gene arginine/serine-rich coiled-coil 2
Tssr53272 5 123736613 to 123736638 25 - TSS region transcription start site region 53272
Tssr53273 5 123745071 to 123745120 49 - TSS region transcription start site region 53273
Cpgi16592 5 123749094 to 123749894 800 CpG island CpG island 16592
Tssr53274 5 123749374 to 123749391 17 - TSS region transcription start site region 53274
Tssr53275 5 123749393 to 123749418 25 - TSS region transcription start site region 53275
Tssr48804 5 123749696 to 123749735 39 + TSS region transcription start site region 48804
Kntc1 5 123749716 to 123821593 71877 + protein coding gene kinetochore associated 1
Tssr48805 5 123809640 to 123809643 3 + TSS region transcription start site region 48805
Tssr1631 5 123832287 to 123832294 7 - TSS region transcription start site region 1631
Cpgi16593 5 123847978 to 123848257 279 CpG island CpG island 16593
Hcar2 5 123863570 to 123865499 1929 - protein coding gene hydroxycarboxylic acid receptor 2
Tssr53276 5 123865444 to 123865451 7 - TSS region transcription start site region 53276
Tssr53277 5 123865462 to 123865473 11 - TSS region transcription start site region 53277
Tssr53278 5 123865483 to 123865488 5 - TSS region transcription start site region 53278
Tssr53279 5 123865491 to 123865518 27 - TSS region transcription start site region 53279
Hcar1 5 123876736 to 123880020 3284 - protein coding gene hydrocarboxylic acid receptor 1
Tssr53280 5 123879992 to 123880012 20 - TSS region transcription start site region 53280
Tssr53281 5 123880030 to 123880039 9 - TSS region transcription start site region 53281
D5Mit1005 5 123880820 to 123880953 133 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 1005
Tssr53282 5 123891789 to 123891808 19 - TSS region transcription start site region 53282
Tssr48806 5 123893816 to 123893827 11 + TSS region transcription start site region 48806
Cpgi16594 5 123906871 to 123907874 1003 CpG island CpG island 16594
Tssr48807 5 123907186 to 123907197 11 + TSS region transcription start site region 48807
Tssr48808 5 123907199 to 123907210 11 + TSS region transcription start site region 48808
Tssr48809 5 123907239 to 123907292 53 + TSS region transcription start site region 48809
Denr 5 123907269 to 123928832 21563 + protein coding gene density-regulated protein
Tssr48810 5 123907294 to 123907315 21 + TSS region transcription start site region 48810
Tssr48811 5 123907376 to 123907387 11 + TSS region transcription start site region 48811
Tssr48812 5 123907522 to 123907560 38 + TSS region transcription start site region 48812
Tssr48813 5 123907562 to 123907571 9 + TSS region transcription start site region 48813
Tssr48814 5 123907572 to 123907587 15 + TSS region transcription start site region 48814
Tssr48815 5 123907596 to 123907607 11 + TSS region transcription start site region 48815
Tssr48816 5 123907622 to 123907633 11 + TSS region transcription start site region 48816
Tssr48817 5 123908082 to 123908114 32 + TSS region transcription start site region 48817
Tssr48818 5 123908178 to 123908188 10 + TSS region transcription start site region 48818
Tssr48819 5 123909090 to 123909108 18 + TSS region transcription start site region 48819
Tssr48820 5 123909124 to 123909133 9 + TSS region transcription start site region 48820
Tssr53283 5 123910493 to 123910537 44 - TSS region transcription start site region 53283
Tssr48821 5 123914986 to 123914992 6 + TSS region transcription start site region 48821
Tssr48822 5 123915093 to 123915107 14 + TSS region transcription start site region 48822
Gm43518 5 123927418 to 123938388 10970 + protein coding gene predicted gene 43518
Cpgi16595 5 123930390 to 123931093 703 CpG island CpG island 16595
Tssr48823 5 123930665 to 123930674 9 + TSS region transcription start site region 48823
Tssr48824 5 123930675 to 123930718 43 + TSS region transcription start site region 48824
Ccdc62 5 123930679 to 123969895 39216 + protein coding gene coiled-coil domain containing 62
Tssr48825 5 123930723 to 123930754 31 + TSS region transcription start site region 48825
Cpgi16596 5 123973098 to 123974373 1275 CpG island CpG island 16596
Tssr48826 5 123973603 to 123973666 63 + TSS region transcription start site region 48826
Hip1r 5 123973609 to 124003215 29606 + protein coding gene huntingtin interacting protein 1 related
Tssr48827 5 123973675 to 123973697 22 + TSS region transcription start site region 48827
Tssr48828 5 123973717 to 123973733 16 + TSS region transcription start site region 48828
Gm46922 5 123973868 to 123975478 1610 + lncRNA gene predicted gene, 46922
Tssr48829 5 123974419 to 123974423 4 + TSS region transcription start site region 48829
D5Mit160 5 123993857 to 123994000 143 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 160
Mir7032 5 123996852 to 123996930 78 + miRNA gene microRNA 7032