Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:123135267-125926851

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681 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
repro2 5 119806972 to 123412074 3605102 heritable phenotypic marker reproductive mutant 2, JAX Reproductive Mutagenesis Program
oar 5 119880432 to 125451502 5571070 heritable phenotypic marker oarleg
Gm26745 5 123047373 to 123230871 183498 - lincRNA gene predicted gene, 26745
AI480526 5 123133723 to 123141666 7943 - lincRNA gene expressed sequence AI480526
Gm38102 5 123133939 to 123137695 3756 + lincRNA gene predicted gene, 38102
Cpgi16574 5 123135465 to 123135731 266 CpG island CpG island 16574
Tssr53205 5 123135507 to 123135530 23 - TSS region transcription start site region 53205
Tssr53206 5 123135548 to 123135559 11 - TSS region transcription start site region 53206
Tssr48758 5 123135617 to 123135632 15 + TSS region transcription start site region 48758
Tssr48759 5 123135791 to 123135802 11 + TSS region transcription start site region 48759
Tssr48760 5 123135833 to 123135855 22 + TSS region transcription start site region 48760
Tssr53207 5 123136538 to 123136555 17 - TSS region transcription start site region 53207
Tssr48761 5 123136639 to 123136672 33 + TSS region transcription start site region 48761
Tssr53208 5 123137718 to 123137740 22 - TSS region transcription start site region 53208
Cpgi16575 5 123137742 to 123137920 178 CpG island CpG island 16575
Cpgi16576 5 123138507 to 123139347 840 CpG island CpG island 16576
Tssr48762 5 123138611 to 123138635 24 + TSS region transcription start site region 48762
Tssr48763 5 123138655 to 123138710 55 + TSS region transcription start site region 48763
4932422M17Rik 5 123138931 to 123141569 2638 + lincRNA gene RIKEN cDNA 4932422M17 gene
Tssr53209 5 123139073 to 123139090 17 - TSS region transcription start site region 53209
Tssr53210 5 123139969 to 123139980 11 - TSS region transcription start site region 53210
Tssr53211 5 123140100 to 123140125 25 - TSS region transcription start site region 53211
Tssr53212 5 123140135 to 123140149 14 - TSS region transcription start site region 53212
Tssr53213 5 123140711 to 123140731 20 - TSS region transcription start site region 53213
Tssr53214 5 123141079 to 123141094 15 - TSS region transcription start site region 53214
Tssr48764 5 123141224 to 123141240 16 + TSS region transcription start site region 48764
Tssr53215 5 123141280 to 123141333 53 - TSS region transcription start site region 53215
Cpgi16577 5 123141285 to 123143563 2278 CpG island CpG island 16577
Tssr53216 5 123141344 to 123141362 18 - TSS region transcription start site region 53216
Tssr48765 5 123141429 to 123141436 7 + TSS region transcription start site region 48765
Tssr48766 5 123142110 to 123142121 11 + TSS region transcription start site region 48766
Tssr48767 5 123142187 to 123142229 42 + TSS region transcription start site region 48767
Setd1b 5 123142193 to 123168629 26436 + protein coding gene SET domain containing 1B
Tssr48768 5 123142230 to 123142286 56 + TSS region transcription start site region 48768
Tssr48769 5 123148256 to 123148269 13 + TSS region transcription start site region 48769
Cpgi16578 5 123148401 to 123148597 196 CpG island CpG island 16578
Tssr53217 5 123150179 to 123150183 4 - TSS region transcription start site region 53217
Gm42024 5 123156531 to 123157065 534 - lncRNA gene predicted gene, 42024
Cpgi16579 5 123165792 to 123166351 559 CpG island CpG island 16579
Tssr48770 5 123167369 to 123167392 23 + TSS region transcription start site region 48770
Tssr48771 5 123167577 to 123167598 21 + TSS region transcription start site region 48771
Hpd 5 123171807 to 123182686 10879 - protein coding gene 4-hydroxyphenylpyruvic acid dioxygenase
Tssr53218 5 123171961 to 123171987 26 - TSS region transcription start site region 53218
Tssr53219 5 123172019 to 123172026 7 - TSS region transcription start site region 53219
Tssr53220 5 123172082 to 123172089 7 - TSS region transcription start site region 53220
Tssr53221 5 123172246 to 123172265 19 - TSS region transcription start site region 53221
Tssr53222 5 123172280 to 123172289 9 - TSS region transcription start site region 53222
Tssr53223 5 123174397 to 123174413 16 - TSS region transcription start site region 53223
Tssr53224 5 123174432 to 123174460 28 - TSS region transcription start site region 53224
Tssr53225 5 123175922 to 123175969 47 - TSS region transcription start site region 53225
Tssr48772 5 123176097 to 123176134 37 + TSS region transcription start site region 48772
Tssr53226 5 123176184 to 123176204 20 - TSS region transcription start site region 53226
Tssr48773 5 123177522 to 123177559 37 + TSS region transcription start site region 48773
Tssr53227 5 123178218 to 123178228 10 - TSS region transcription start site region 53227
Tssr53228 5 123178261 to 123178272 11 - TSS region transcription start site region 53228
Tssr53229 5 123180686 to 123180698 12 - TSS region transcription start site region 53229
Tssr53230 5 123181447 to 123181458 11 - TSS region transcription start site region 53230
Tssr53231 5 123181467 to 123181479 12 - TSS region transcription start site region 53231
Tssr53232 5 123181495 to 123181500 5 - TSS region transcription start site region 53232
Tssr53233 5 123181637 to 123181660 23 - TSS region transcription start site region 53233
Tssr53234 5 123181693 to 123181699 6 - TSS region transcription start site region 53234
Tssr53235 5 123182704 to 123182731 27 - TSS region transcription start site region 53235
Gm43409 5 123188701 to 123191588 2887 - lincRNA gene predicted gene 43409
Cpgi16580 5 123228104 to 123228707 603 CpG island CpG island 16580
Psmd9 5 123228190 to 123250126 21936 + protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
Tssr48774 5 123228216 to 123228227 11 + TSS region transcription start site region 48774
Tssr48775 5 123228238 to 123228301 63 + TSS region transcription start site region 48775
Tssr48776 5 123239676 to 123239718 42 + TSS region transcription start site region 48776
Tssr1628 5 123248697 to 123248728 31 + TSS region transcription start site region 1628
Cpgi16581 5 123251928 to 123252269 341 CpG island CpG island 16581
Gm42025 5 123252015 to 123253852 1837 + lncRNA gene predicted gene, 42025
Tssr48777 5 123252087 to 123252136 49 + TSS region transcription start site region 48777
Tssr48778 5 123253666 to 123253692 26 + TSS region transcription start site region 48778
Wdr66 5 123253856 to 123327484 73628 + protein coding gene WD repeat domain 66
Rpl35a-ps6 5 123255481 to 123255813 332 - pseudogene ribosomal protein L35A, pseudogene 6
Tssr48779 5 123273748 to 123273751 3 + TSS region transcription start site region 48779
D5Mit137 5 123283604 to 123283753 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 137
Gm15857 5 123293638 to 123310324 16686 - antisense lncRNA gene predicted gene 15857
Tssr48780 5 123302402 to 123302411 9 + TSS region transcription start site region 48780
Tssr48781 5 123302413 to 123302426 13 + TSS region transcription start site region 48781
Tssr48782 5 123302497 to 123302508 11 + TSS region transcription start site region 48782
Tssr53236 5 123310349 to 123310360 11 - TSS region transcription start site region 53236
Tssr48783 5 123310499 to 123310522 23 + TSS region transcription start site region 48783
Tssr48784 5 123310533 to 123310544 11 + TSS region transcription start site region 48784
Gm15860 5 123334313 to 123345138 10825 - antisense lncRNA gene predicted gene 15860
Tssr48785 5 123343956 to 123343970 14 + TSS region transcription start site region 48785
Cpgi16582 5 123343979 to 123345849 1870 CpG island CpG island 16582
Tssr48786 5 123344336 to 123344347 11 + TSS region transcription start site region 48786
Tssr48787 5 123344440 to 123344576 136 + TSS region transcription start site region 48787
Bcl7a 5 123344448 to 123374083 29635 + protein coding gene B cell CLL/lymphoma 7A
Tssr48788 5 123344582 to 123344629 47 + TSS region transcription start site region 48788
Tssr48789 5 123344666 to 123344675 9 + TSS region transcription start site region 48789
Tssr1629 5 123344929 to 123344933 4 + TSS region transcription start site region 1629
Tssr53237 5 123345855 to 123345860 5 - TSS region transcription start site region 53237
Gm23458 5 123360832 to 123361000 168 + snRNA gene predicted gene, 23458
5830487J09Rik 5 123366472 to 123368919 2447 + unclassified gene RIKEN cDNA 5830487J09 gene
Cpgi16583 5 123373244 to 123373606 362 CpG island CpG island 16583
Cpgi16584 5 123381941 to 123382165 224 CpG island CpG island 16584
Gm15747 5 123393649 to 123397957 4308 - antisense lncRNA gene predicted gene 15747
Cpgi16585 5 123394392 to 123395608 1216 CpG island CpG island 16585
Tssr53238 5 123394635 to 123394638 3 - TSS region transcription start site region 53238
Tssr48790 5 123394730 to 123394739 9 + TSS region transcription start site region 48790
Tssr48791 5 123394782 to 123394826 44 + TSS region transcription start site region 48791
Mlxip 5 123394798 to 123457932 63134 + protein coding gene MLX interacting protein
Gm42907 5 123397240 to 123399387 2147 + unclassified gene predicted gene 42907
Tssr53239 5 123397956 to 123397991 35 - TSS region transcription start site region 53239
Gm42908 5 123401072 to 123401941 869 + unclassified gene predicted gene 42908
Tssr48792 5 123401074 to 123401084 10 + TSS region transcription start site region 48792
D5Mit413 5 123402149 to 123402297 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 413
Gm43813 5 123406487 to 123411864 5377 + unclassified non-coding RNA gene predicted gene 43813
D5Mit65 5 123411936 to 123412074 138 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 65
Tssr48793 5 123414938 to 123414945 7 + TSS region transcription start site region 48793
Tssr48794 5 123429049 to 123429055 6 + TSS region transcription start site region 48794
Tssr48795 5 123442290 to 123442304 14 + TSS region transcription start site region 48795
Tssr48796 5 123445797 to 123445812 15 + TSS region transcription start site region 48796
Tssr48797 5 123462471 to 123462508 37 + TSS region transcription start site region 48797
Rpl31-ps6 5 123466509 to 123466886 377 + pseudogene ribosomal protein L31, pseudogene 6
Il31 5 123480149 to 123482634 2485 - protein coding gene interleukin 31
Tssr53240 5 123482569 to 123482598 29 - TSS region transcription start site region 53240
Tssr53241 5 123482609 to 123482627 18 - TSS region transcription start site region 53241
Tssr53242 5 123482633 to 123482644 11 - TSS region transcription start site region 53242
Cpgi16586 5 123489185 to 123489492 307 CpG island CpG island 16586
Tssr48798 5 123489301 to 123489329 28 + TSS region transcription start site region 48798
Lrrc43 5 123489305 to 123508205 18900 + protein coding gene leucine rich repeat containing 43
Cpgi16587 5 123507978 to 123509012 1034 CpG island CpG island 16587
Gm15751 5 123508395 to 123514011 5616 + sense overlapping lncRNA gene predicted gene 15751
Tssr48799 5 123508476 to 123508491 15 + TSS region transcription start site region 48799
B3gnt4 5 123510460 to 123511882 1422 + protein coding gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4
Diablo 5 123511330 to 123524164 12834 - protein coding gene diablo, IAP-binding mitochondrial protein
Gm49027 5 123512082 to 123525488 13406 - protein coding gene predicted gene, 49027
Gm24682 5 123518231 to 123518367 136 + snoRNA gene predicted gene, 24682
Mir7647 5 123522637 to 123522695 58 - miRNA gene microRNA 7647
Cpgi16588 5 123523405 to 123524861 1456 CpG island CpG island 16588
Tssr53243 5 123524124 to 123524167 43 - TSS region transcription start site region 53243
Tssr53244 5 123525392 to 123525424 32 - TSS region transcription start site region 53244
Tssr53245 5 123525435 to 123525465 30 - TSS region transcription start site region 53245
Vps33a 5 123528659 to 123573038 44379 - protein coding gene VPS33A CORVET/HOPS core subunit
1700015O03Rik 5 123543791 to 123544359 568 unclassified gene RIKEN cDNA 1700015O03 gene
Gm43133 5 123561525 to 123561987 462 - unclassified gene predicted gene 43133
Cpgi16589 5 123572638 to 123573189 551 CpG island CpG island 16589
Tssr53246 5 123572976 to 123573031 55 - TSS region transcription start site region 53246
Tssr53247 5 123573035 to 123573040 5 - TSS region transcription start site region 53247
Clip1 5 123577794 to 123684361 106567 - protein coding gene CAP-GLY domain containing linker protein 1
Tssr53248 5 123603675 to 123603706 31 - TSS region transcription start site region 53248
Tssr53249 5 123612153 to 123612178 25 - TSS region transcription start site region 53249
Tssr53250 5 123621846 to 123621850 4 - TSS region transcription start site region 53250
Gm24840 5 123628201 to 123628347 146 + snRNA gene predicted gene, 24840
Tssr48800 5 123630014 to 123630032 18 + TSS region transcription start site region 48800
Tssr53251 5 123637838 to 123637847 9 - TSS region transcription start site region 53251
Tssr48801 5 123641759 to 123641768 9 + TSS region transcription start site region 48801
Tssr53252 5 123661651 to 123661663 12 - TSS region transcription start site region 53252
Tssr53253 5 123661664 to 123661690 26 - TSS region transcription start site region 53253
Tssr48802 5 123662225 to 123662231 6 + TSS region transcription start site region 48802
Tssr53254 5 123666682 to 123666695 13 - TSS region transcription start site region 53254
Tssr53255 5 123666701 to 123666709 8 - TSS region transcription start site region 53255
Tssr53256 5 123666713 to 123666726 13 - TSS region transcription start site region 53256
Tssr53257 5 123670996 to 123671034 38 - TSS region transcription start site region 53257
Tssr53258 5 123671052 to 123671063 11 - TSS region transcription start site region 53258
Tssr53259 5 123671077 to 123671091 14 - TSS region transcription start site region 53259
Tssr53260 5 123671097 to 123671109 12 - TSS region transcription start site region 53260
Tssr53261 5 123671111 to 123671130 19 - TSS region transcription start site region 53261
Tssr53262 5 123671150 to 123671172 22 - TSS region transcription start site region 53262
Gm42651 5 123682130 to 123683468 1338 - unclassified gene predicted gene 42651
Cpgi16590 5 123683455 to 123685035 1580 CpG island CpG island 16590
Tssr53263 5 123684275 to 123684286 11 - TSS region transcription start site region 53263
Tssr53264 5 123684289 to 123684379 90 - TSS region transcription start site region 53264
Gm43797 5 123684775 to 123685306 531 + unclassified gene predicted gene 43797
Tssr53265 5 123693478 to 123693481 3 - TSS region transcription start site region 53265
Zcchc8 5 123698302 to 123721044 22742 - protein coding gene zinc finger, CCHC domain containing 8
Tssr53266 5 123700064 to 123700072 8 - TSS region transcription start site region 53266
Tssr1630 5 123714044 to 123714046 2 + TSS region transcription start site region 1630
Tssr48803 5 123714893 to 123714900 7 + TSS region transcription start site region 48803
Cpgi16591 5 123720166 to 123721164 998 CpG island CpG island 16591
Tssr53267 5 123720933 to 123720960 27 - TSS region transcription start site region 53267
Tssr53268 5 123720962 to 123720973 11 - TSS region transcription start site region 53268
Tssr53269 5 123721007 to 123721062 55 - TSS region transcription start site region 53269
Tssr53270 5 123721063 to 123721074 11 - TSS region transcription start site region 53270
Tssr53271 5 123721090 to 123721112 22 - TSS region transcription start site region 53271
Gm19601 5 123725147 to 123725589 442 + pseudogene predicted gene, 19601
Rsrc2 5 123728426 to 123749414 20988 - protein coding gene arginine/serine-rich coiled-coil 2
Tssr53272 5 123736613 to 123736638 25 - TSS region transcription start site region 53272
Tssr53273 5 123745071 to 123745120 49 - TSS region transcription start site region 53273
Cpgi16592 5 123749094 to 123749894 800 CpG island CpG island 16592
Tssr53274 5 123749374 to 123749391 17 - TSS region transcription start site region 53274
Tssr53275 5 123749393 to 123749418 25 - TSS region transcription start site region 53275
Tssr48804 5 123749696 to 123749735 39 + TSS region transcription start site region 48804
Kntc1 5 123749716 to 123821593 71877 + protein coding gene kinetochore associated 1
Tssr48805 5 123809640 to 123809643 3 + TSS region transcription start site region 48805
Tssr1631 5 123832287 to 123832294 7 - TSS region transcription start site region 1631
Cpgi16593 5 123847978 to 123848257 279 CpG island CpG island 16593
Hcar2 5 123863570 to 123865499 1929 - protein coding gene hydroxycarboxylic acid receptor 2
Tssr53276 5 123865444 to 123865451 7 - TSS region transcription start site region 53276
Tssr53277 5 123865462 to 123865473 11 - TSS region transcription start site region 53277
Tssr53278 5 123865483 to 123865488 5 - TSS region transcription start site region 53278
Tssr53279 5 123865491 to 123865518 27 - TSS region transcription start site region 53279
Hcar1 5 123876736 to 123880020 3284 - protein coding gene hydrocarboxylic acid receptor 1
Tssr53280 5 123879992 to 123880012 20 - TSS region transcription start site region 53280
Tssr53281 5 123880030 to 123880039 9 - TSS region transcription start site region 53281
D5Mit1005 5 123880820 to 123880953 133 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 1005
Tssr53282 5 123891789 to 123891808 19 - TSS region transcription start site region 53282