Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:122839996-123129997

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104 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm33044 5 122849628 to 122850136 508 - lncRNA gene predicted gene, 33044
Cpgi16561 5 122849792 to 122850923 1131 CpG island CpG island 16561
Tssr53155 5 122849872 to 122849890 18 - TSS region transcription start site region 53155
Tssr48722 5 122850135 to 122850142 7 + TSS region transcription start site region 48722
Tssr48723 5 122850154 to 122850165 11 + TSS region transcription start site region 48723
Rnf34 5 122850162 to 122868945 18783 + protein coding gene ring finger protein 34
Tssr48724 5 122850167 to 122850178 11 + TSS region transcription start site region 48724
Tssr48725 5 122850186 to 122850198 12 + TSS region transcription start site region 48725
Tssr48726 5 122850199 to 122850214 15 + TSS region transcription start site region 48726
Kdm2b 5 122870664 to 122989162 118498 - protein coding gene lysine (K)-specific demethylase 2B
Cpgi16562 5 122888523 to 122888756 233 CpG island CpG island 16562
Tssr53156 5 122899109 to 122899113 4 - TSS region transcription start site region 53156
Cpgi16563 5 122899242 to 122901264 2022 CpG island CpG island 16563
Tssr53157 5 122900267 to 122900377 110 - TSS region transcription start site region 53157
Tssr53158 5 122901698 to 122901720 22 - TSS region transcription start site region 53158
Gm43411 5 122906822 to 122908400 1578 - unclassified gene predicted gene 43411
Tssr53159 5 122915035 to 122915041 6 - TSS region transcription start site region 53159
Tssr53160 5 122922088 to 122922103 15 - TSS region transcription start site region 53160
Gm33118 5 122942237 to 122952325 10088 + lncRNA gene predicted gene, 33118
Tssr48727 5 122942598 to 122942612 14 + TSS region transcription start site region 48727
Tssr53161 5 122949157 to 122949194 37 - TSS region transcription start site region 53161
Tssr53162 5 122949200 to 122949210 10 - TSS region transcription start site region 53162
Tssr53163 5 122949233 to 122949248 15 - TSS region transcription start site region 53163
Tssr48728 5 122949511 to 122949554 43 + TSS region transcription start site region 48728
Cpgi16564 5 122951556 to 122952738 1182 CpG island CpG island 16564
Tssr53164 5 122951824 to 122951860 36 - TSS region transcription start site region 53164
Tssr53165 5 122952192 to 122952202 10 - TSS region transcription start site region 53165
Tssr53166 5 122952685 to 122952689 4 - TSS region transcription start site region 53166
Tssr53167 5 122984996 to 122984997 1 - TSS region transcription start site region 53167
Cpgi16565 5 122987358 to 122988729 1371 CpG island CpG island 16565
Tssr53168 5 122987401 to 122987447 46 - TSS region transcription start site region 53168
Tssr48729 5 122987580 to 122987612 32 + TSS region transcription start site region 48729
Gm44574 5 122987683 to 123012874 25191 - unclassified non-coding RNA gene predicted gene 44574
Tssr53169 5 122988487 to 122988526 39 - TSS region transcription start site region 53169
Tssr53170 5 122988683 to 122988705 22 - TSS region transcription start site region 53170
Tssr53171 5 122989043 to 122989080 37 - TSS region transcription start site region 53171
Cpgi16566 5 122989062 to 122989533 471 CpG island CpG island 16566
Tssr53172 5 122989086 to 122989111 25 - TSS region transcription start site region 53172
Tssr48730 5 122989242 to 122989252 10 + TSS region transcription start site region 48730
Tssr53173 5 122989260 to 122989280 20 - TSS region transcription start site region 53173
Tssr48731 5 122989265 to 122989281 16 + TSS region transcription start site region 48731
Tssr53174 5 122989283 to 122989338 55 - TSS region transcription start site region 53174
Tssr48732 5 122989290 to 122989315 25 + TSS region transcription start site region 48732
Tssr48733 5 122989348 to 122989366 18 + TSS region transcription start site region 48733
A930024E05Rik 5 122989354 to 122998345 8991 + antisense lncRNA gene RIKEN cDNA A930024E05 gene
Tssr48734 5 122989575 to 122989612 37 + TSS region transcription start site region 48734
Tssr48735 5 122989718 to 122989739 21 + TSS region transcription start site region 48735
Tssr48736 5 122989744 to 122989762 18 + TSS region transcription start site region 48736
Tssr48737 5 122989918 to 122989943 25 + TSS region transcription start site region 48737
Tssr53175 5 122990285 to 122990290 5 - TSS region transcription start site region 53175
Tssr53176 5 122990404 to 122990407 3 - TSS region transcription start site region 53176
Tssr53177 5 122990460 to 122990463 3 - TSS region transcription start site region 53177
Tssr53178 5 122990477 to 122990495 18 - TSS region transcription start site region 53178
Tssr53179 5 122990518 to 122990529 11 - TSS region transcription start site region 53179
Tssr53180 5 122990533 to 122990573 40 - TSS region transcription start site region 53180
Tssr48738 5 122990758 to 122990769 11 + TSS region transcription start site region 48738
Tssr48739 5 122990775 to 122990780 5 + TSS region transcription start site region 48739
Tssr48740 5 122990790 to 122990825 35 + TSS region transcription start site region 48740
Tssr48741 5 122990855 to 122990864 9 + TSS region transcription start site region 48741
Tssr53181 5 122994441 to 122994455 14 - TSS region transcription start site region 53181
Tssr48742 5 122995099 to 122995102 3 + TSS region transcription start site region 48742
Gm2479 5 123007293 to 123014917 7624 - antisense lncRNA gene predicted gene 2479
Tssr53182 5 123012876 to 123012880 4 - TSS region transcription start site region 53182
Cpgi16567 5 123014513 to 123015900 1387 CpG island CpG island 16567
Tssr53183 5 123014840 to 123014863 23 - TSS region transcription start site region 53183
Tssr48743 5 123015010 to 123015118 108 + TSS region transcription start site region 48743
Orai1 5 123015074 to 123030452 15378 + protein coding gene ORAI calcium release-activated calcium modulator 1
Tssr48744 5 123015144 to 123015153 9 + TSS region transcription start site region 48744
Tssr48745 5 123015280 to 123015299 19 + TSS region transcription start site region 48745
Tssr48746 5 123015312 to 123015335 23 + TSS region transcription start site region 48746
Tssr53184 5 123015895 to 123015910 15 - TSS region transcription start site region 53184
Tssr53185 5 123015946 to 123015957 11 - TSS region transcription start site region 53185
Tssr53186 5 123015969 to 123015980 11 - TSS region transcription start site region 53186
Tssr48747 5 123016229 to 123016240 11 + TSS region transcription start site region 48747
Tssr53187 5 123017557 to 123017575 18 - TSS region transcription start site region 53187
Tssr53188 5 123018944 to 123018949 5 - TSS region transcription start site region 53188
Tssr53189 5 123018970 to 123018977 7 - TSS region transcription start site region 53189
Cpgi16568 5 123029128 to 123029610 482 CpG island CpG island 16568
Morn3 5 123035769 to 123047016 11247 - protein coding gene MORN repeat containing 3
Gm43412 5 123036000 to 123038817 2817 + unclassified gene predicted gene 43412
Tssr53190 5 123036003 to 123036007 4 - TSS region transcription start site region 53190
Tssr48748 5 123036224 to 123036228 4 + TSS region transcription start site region 48748
Cpgi16569 5 123036796 to 123036973 177 CpG island CpG island 16569
Gm42023 5 123037860 to 123041582 3722 + lncRNA gene predicted gene, 42023
Cpgi16570 5 123039097 to 123039576 479 CpG island CpG island 16570
Tssr48749 5 123041071 to 123041086 15 + TSS region transcription start site region 48749
Tssr53191 5 123046966 to 123046988 22 - TSS region transcription start site region 53191
Tssr53192 5 123046999 to 123047025 26 - TSS region transcription start site region 53192
Tssr48750 5 123047100 to 123047122 22 + TSS region transcription start site region 48750
Gm26745 5 123047373 to 123230871 183498 - lincRNA gene predicted gene, 26745
Tssr53193 5 123049380 to 123049419 39 - TSS region transcription start site region 53193
Cpgi16571 5 123057799 to 123058280 481 CpG island CpG island 16571
Tssr48751 5 123066207 to 123066234 27 + TSS region transcription start site region 48751
Gm6444 5 123066242 to 123066699 457 + pseudogene predicted gene 6444
Cpgi16572 5 123075918 to 123076919 1001 CpG island CpG island 16572
Tssr48752 5 123076105 to 123076132 27 + TSS region transcription start site region 48752
Tmem120b 5 123076264 to 123117445 41181 + protein coding gene transmembrane protein 120B
Tssr48753 5 123076275 to 123076354 79 + TSS region transcription start site region 48753
Tssr48754 5 123076411 to 123076426 15 + TSS region transcription start site region 48754
Tssr48755 5 123104165 to 123104179 14 + TSS region transcription start site region 48755
Gm43413 5 123110696 to 123112261 1565 + unclassified gene predicted gene 43413
Rhof 5 123118180 to 123132629 14449 - protein coding gene ras homolog family member F (in filopodia)
Tssr53194 5 123128512 to 123128523 11 - TSS region transcription start site region 53194
Tssr48756 5 123128619 to 123128634 15 + TSS region transcription start site region 48756