Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:122263914-122383917

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tctn1 5 122239495 to 122264492 24997 - protein coding gene tectonic family member 1
Cpgi16546 5 122264020 to 122264540 520 CpG island CpG island 16546
Tssr53092 5 122264378 to 122264455 77 - TSS region transcription start site region 53092
1700112N08Rik 5 122275323 to 122279719 4396 + lncRNA gene RIKEN cDNA 1700112N08 gene
Tssr48671 5 122275426 to 122275456 30 + TSS region transcription start site region 48671
Cpgi16547 5 122284203 to 122285598 1395 CpG island CpG island 16547
Tssr48672 5 122284372 to 122284397 25 + TSS region transcription start site region 48672
Pptc7 5 122284398 to 122324281 39883 + protein coding gene PTC7 protein phosphatase homolog
Gm15842 5 122302422 to 122303039 617 + pseudogene predicted gene 15842
Tssr48673 5 122309151 to 122309173 22 + TSS region transcription start site region 48673
Rad9b 5 122323223 to 122354233 31010 - protein coding gene RAD9 checkpoint clamp component B
Tssr53093 5 122323914 to 122323917 3 - TSS region transcription start site region 53093
Cpgi16548 5 122325087 to 122325277 190 CpG island CpG island 16548
Cpgi16549 5 122353879 to 122355144 1265 CpG island CpG island 16549
Tssr53094 5 122354161 to 122354237 76 - TSS region transcription start site region 53094
Tssr48674 5 122354356 to 122354359 3 + TSS region transcription start site region 48674
Tssr48675 5 122354361 to 122354368 7 + TSS region transcription start site region 48675
Vps29 5 122354377 to 122364975 10598 + protein coding gene VPS29 retromer complex component
Tssr48676 5 122354385 to 122354455 70 + TSS region transcription start site region 48676
Fam216a 5 122364584 to 122371963 7379 - protein coding gene family with sequence similarity 216, member A
D5Mit118 5 122366221 to 122366356 135 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 118
Cpgi16550 5 122371638 to 122372909 1271 CpG island CpG island 16550
Tssr48677 5 122371875 to 122371887 12 + TSS region transcription start site region 48677
Tssr53095 5 122371975 to 122371980 5 - TSS region transcription start site region 53095
Tssr53096 5 122371987 to 122371998 11 - TSS region transcription start site region 53096
Tssr53097 5 122372012 to 122372070 58 - TSS region transcription start site region 53097
Tssr53098 5 122372230 to 122372390 160 - TSS region transcription start site region 53098
Tssr48678 5 122372445 to 122372477 32 + TSS region transcription start site region 48678
Tssr48679 5 122372494 to 122372513 19 + TSS region transcription start site region 48679
Gpn3 5 122372508 to 122382771 10263 + protein coding gene GPN-loop GTPase 3
Tssr48680 5 122372515 to 122372604 89 + TSS region transcription start site region 48680
Tssr48681 5 122372608 to 122372623 15 + TSS region transcription start site region 48681
Gm42830 5 122377408 to 122377720 312 + unclassified gene predicted gene 42830
Gm32853 5 122380057 to 122394812 14755 - lncRNA gene predicted gene, 32853