Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:122238356-122568404

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hvcn1 5 122206807 to 122242297 35490 + protein coding gene hydrogen voltage-gated channel 1
4930565B19Rik 5 122237847 to 122240188 2341 unclassified gene RIKEN cDNA 4930565B19 gene
Tctn1 5 122239495 to 122264492 24997 - protein coding gene tectonic family member 1
Tssr48665 5 122240655 to 122240671 16 + TSS region transcription start site region 48665
Tssr48666 5 122240725 to 122240757 32 + TSS region transcription start site region 48666
Tssr48667 5 122240764 to 122240826 62 + TSS region transcription start site region 48667
Tssr53085 5 122240846 to 122240863 17 - TSS region transcription start site region 53085
Tssr53086 5 122240917 to 122240940 23 - TSS region transcription start site region 53086
Tssr48668 5 122240932 to 122241013 81 + TSS region transcription start site region 48668
Tssr48669 5 122241023 to 122241063 40 + TSS region transcription start site region 48669
Tssr48670 5 122241157 to 122241176 19 + TSS region transcription start site region 48670
Tssr53087 5 122241234 to 122241249 15 - TSS region transcription start site region 53087
Tssr53088 5 122241382 to 122241407 25 - TSS region transcription start site region 53088
Tssr53089 5 122246481 to 122246485 4 - TSS region transcription start site region 53089
Tssr53090 5 122248084 to 122248093 9 - TSS region transcription start site region 53090
Gm15481 5 122253002 to 122253540 538 + pseudogene predicted gene 15481
Tssr53091 5 122253580 to 122253584 4 - TSS region transcription start site region 53091
Cpgi16546 5 122264020 to 122264540 520 CpG island CpG island 16546
Tssr53092 5 122264378 to 122264455 77 - TSS region transcription start site region 53092
1700112N08Rik 5 122275323 to 122279719 4396 + lncRNA gene RIKEN cDNA 1700112N08 gene
Tssr48671 5 122275426 to 122275456 30 + TSS region transcription start site region 48671
Cpgi16547 5 122284203 to 122285598 1395 CpG island CpG island 16547
Tssr48672 5 122284372 to 122284397 25 + TSS region transcription start site region 48672
Pptc7 5 122284398 to 122324281 39883 + protein coding gene PTC7 protein phosphatase homolog
Gm15842 5 122302422 to 122303039 617 + pseudogene predicted gene 15842
Tssr48673 5 122309151 to 122309173 22 + TSS region transcription start site region 48673
Rad9b 5 122323223 to 122354233 31010 - protein coding gene RAD9 checkpoint clamp component B
Tssr53093 5 122323914 to 122323917 3 - TSS region transcription start site region 53093
Cpgi16548 5 122325087 to 122325277 190 CpG island CpG island 16548
Cpgi16549 5 122353879 to 122355144 1265 CpG island CpG island 16549
Tssr53094 5 122354161 to 122354237 76 - TSS region transcription start site region 53094
Tssr48674 5 122354356 to 122354359 3 + TSS region transcription start site region 48674
Tssr48675 5 122354361 to 122354368 7 + TSS region transcription start site region 48675
Vps29 5 122354377 to 122364975 10598 + protein coding gene VPS29 retromer complex component
Tssr48676 5 122354385 to 122354455 70 + TSS region transcription start site region 48676
Fam216a 5 122364584 to 122371963 7379 - protein coding gene family with sequence similarity 216, member A
D5Mit118 5 122366221 to 122366356 135 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 118
Cpgi16550 5 122371638 to 122372909 1271 CpG island CpG island 16550
Tssr48677 5 122371875 to 122371887 12 + TSS region transcription start site region 48677
Tssr53095 5 122371975 to 122371980 5 - TSS region transcription start site region 53095
Tssr53096 5 122371987 to 122371998 11 - TSS region transcription start site region 53096
Tssr53097 5 122372012 to 122372070 58 - TSS region transcription start site region 53097
Tssr53098 5 122372230 to 122372390 160 - TSS region transcription start site region 53098
Tssr48678 5 122372445 to 122372477 32 + TSS region transcription start site region 48678
Tssr48679 5 122372494 to 122372513 19 + TSS region transcription start site region 48679
Gpn3 5 122372508 to 122382771 10263 + protein coding gene GPN-loop GTPase 3
Tssr48680 5 122372515 to 122372604 89 + TSS region transcription start site region 48680
Tssr48681 5 122372608 to 122372623 15 + TSS region transcription start site region 48681
Gm42830 5 122377408 to 122377720 312 + unclassified gene predicted gene 42830
Gm32853 5 122380057 to 122394812 14755 - lncRNA gene predicted gene, 32853
Cpgi16551 5 122391714 to 122392713 999 CpG island CpG island 16551
Tssr53099 5 122391741 to 122391762 21 - TSS region transcription start site region 53099
Arpc3 5 122391878 to 122406181 14303 + protein coding gene actin related protein 2/3 complex, subunit 3
Tssr48682 5 122391890 to 122391928 38 + TSS region transcription start site region 48682
Tssr48683 5 122391942 to 122391958 16 + TSS region transcription start site region 48683
Tssr48684 5 122391959 to 122391960 1 + TSS region transcription start site region 48684
Tssr48685 5 122392270 to 122392274 4 + TSS region transcription start site region 48685
Tssr48686 5 122396747 to 122396753 6 + TSS region transcription start site region 48686
Tssr48687 5 122396838 to 122396895 57 + TSS region transcription start site region 48687
Tssr53100 5 122396890 to 122396903 13 - TSS region transcription start site region 53100
Tssr53101 5 122397013 to 122397025 12 - TSS region transcription start site region 53101
Tssr48688 5 122401629 to 122401650 21 + TSS region transcription start site region 48688
Tssr48689 5 122403356 to 122403404 48 + TSS region transcription start site region 48689
Tssr48690 5 122404140 to 122404195 55 + TSS region transcription start site region 48690
Tssr48691 5 122406074 to 122406115 41 + TSS region transcription start site region 48691
Gm42829 5 122408490 to 122411074 2584 + sense intronic lncRNA gene predicted gene 42829
D730048M23Rik 5 122419283 to 122420599 1316 unclassified gene RIKEN cDNA D730048M23 gene
Cpgi16552 5 122421970 to 122423116 1146 CpG island CpG island 16552
Tssr48692 5 122422440 to 122422495 55 + TSS region transcription start site region 48692
Anapc7 5 122422444 to 122444912 22468 + protein coding gene anaphase promoting complex subunit 7
Tssr48693 5 122422496 to 122422520 24 + TSS region transcription start site region 48693
Gm15846 5 122438596 to 122438915 319 - pseudogene predicted gene 15846
Atp2a2 5 122453513 to 122502225 48712 - protein coding gene ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
Tssr53102 5 122456929 to 122456959 30 - TSS region transcription start site region 53102
Tssr53103 5 122456986 to 122456999 13 - TSS region transcription start site region 53103
Tssr53104 5 122457026 to 122457047 21 - TSS region transcription start site region 53104
Tssr53105 5 122458483 to 122458501 18 - TSS region transcription start site region 53105
Tssr53106 5 122458517 to 122458536 19 - TSS region transcription start site region 53106
Tssr53107 5 122458542 to 122458551 9 - TSS region transcription start site region 53107
Tssr1625 5 122458556 to 122458567 11 - TSS region transcription start site region 1625
Tssr53108 5 122459495 to 122459532 37 - TSS region transcription start site region 53108
Tssr53109 5 122459538 to 122459559 21 - TSS region transcription start site region 53109
Tssr53110 5 122459604 to 122459620 16 - TSS region transcription start site region 53110
Tssr53111 5 122459625 to 122459636 11 - TSS region transcription start site region 53111
Tssr53112 5 122460111 to 122460148 37 - TSS region transcription start site region 53112
Tssr53113 5 122460696 to 122460713 17 - TSS region transcription start site region 53113
Tssr53114 5 122460938 to 122460954 16 - TSS region transcription start site region 53114
Tssr53115 5 122465975 to 122465992 17 - TSS region transcription start site region 53115
Tssr53116 5 122469484 to 122469542 58 - TSS region transcription start site region 53116
Tssr53117 5 122471207 to 122471256 49 - TSS region transcription start site region 53117
Tssr53118 5 122479566 to 122479570 4 - TSS region transcription start site region 53118
Tssr53119 5 122480407 to 122480415 8 - TSS region transcription start site region 53119
Gm43359 5 122482800 to 122484999 2199 - unclassified gene predicted gene 43359
Tssr53120 5 122486288 to 122486309 21 - TSS region transcription start site region 53120
Tssr48694 5 122489236 to 122489250 14 + TSS region transcription start site region 48694
Tssr53121 5 122489313 to 122489326 13 - TSS region transcription start site region 53121
Tssr53122 5 122491707 to 122491739 32 - TSS region transcription start site region 53122
Tssr48695 5 122491733 to 122491740 7 + TSS region transcription start site region 48695
Tssr48696 5 122491741 to 122491763 22 + TSS region transcription start site region 48696
Tssr53123 5 122491752 to 122491767 15 - TSS region transcription start site region 53123
Gm43360 5 122492022 to 122494908 2886 - unclassified gene predicted gene 43360
Gm43361 5 122496159 to 122500848 4689 + unclassified gene predicted gene 43361
Tssr53124 5 122500332 to 122500341 9 - TSS region transcription start site region 53124
Tssr53125 5 122500364 to 122500375 11 - TSS region transcription start site region 53125
Tssr48697 5 122500726 to 122500735 9 + TSS region transcription start site region 48697
Tssr53126 5 122500824 to 122500833 9 - TSS region transcription start site region 53126
Tssr1626 5 122500929 to 122500931 2 + TSS region transcription start site region 1626
Cpgi16553 5 122501063 to 122503058 1995 CpG island CpG island 16553
Tssr53127 5 122501215 to 122501223 8 - TSS region transcription start site region 53127
Tssr53128 5 122501250 to 122501265 15 - TSS region transcription start site region 53128
Tssr53129 5 122501271 to 122501281 10 - TSS region transcription start site region 53129
Tssr48698 5 122501560 to 122501613 53 + TSS region transcription start site region 48698
Tssr48699 5 122501708 to 122501735 27 + TSS region transcription start site region 48699
Tssr53130 5 122501777 to 122501788 11 - TSS region transcription start site region 53130
Tssr48700 5 122501781 to 122501810 29 + TSS region transcription start site region 48700
Tssr53131 5 122502136 to 122502145 9 - TSS region transcription start site region 53131
Tssr53132 5 122502162 to 122502176 14 - TSS region transcription start site region 53132
Tssr53133 5 122502192 to 122502244 52 - TSS region transcription start site region 53133
Tssr53134 5 122502267 to 122502278 11 - TSS region transcription start site region 53134
Tssr53135 5 122502283 to 122502294 11 - TSS region transcription start site region 53135
Tssr48701 5 122502466 to 122502482 16 + TSS region transcription start site region 48701
Tssr53136 5 122502627 to 122502654 27 - TSS region transcription start site region 53136
Tssr53137 5 122502731 to 122502742 11 - TSS region transcription start site region 53137
Gm22965 5 122506789 to 122506889 100 + snRNA gene predicted gene, 22965
1700040P09Rik 5 122513209 to 122516582 3373 + lncRNA gene RIKEN cDNA 1700040P09 gene
Tssr48702 5 122513994 to 122514023 29 + TSS region transcription start site region 48702
Tssr53138 5 122520806 to 122520810 4 - TSS region transcription start site region 53138
Tssr48703 5 122525436 to 122525469 33 + TSS region transcription start site region 48703
Ift81 5 122550204 to 122614518 64314 - protein coding gene intraflagellar transport 81
Tssr53139 5 122560703 to 122560716 13 - TSS region transcription start site region 53139
Tssr53140 5 122560738 to 122560755 17 - TSS region transcription start site region 53140
Tssr53141 5 122560768 to 122560777 9 - TSS region transcription start site region 53141
Tssr53142 5 122560805 to 122560812 7 - TSS region transcription start site region 53142
Tssr53143 5 122560835 to 122560846 11 - TSS region transcription start site region 53143
Gm43541 5 122567524 to 122568104 580 - unclassified gene predicted gene 43541