Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:122110932-122371013

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Myl2 5 122100904 to 122113398 12494 + protein coding gene myosin, light polypeptide 2, regulatory, cardiac, slow
Ccdc63 5 122108052 to 122138083 30031 - protein coding gene coiled-coil domain containing 63
Tssr48635 5 122112180 to 122112225 45 + TSS region transcription start site region 48635
Tssr53078 5 122113606 to 122113617 11 - TSS region transcription start site region 53078
Cpgi16543 5 122129686 to 122129872 186 CpG island CpG island 16543
Tssr53079 5 122130406 to 122130421 15 - TSS region transcription start site region 53079
Cpgi16544 5 122131783 to 122132246 463 CpG island CpG island 16544
Tssr48636 5 122131943 to 122131948 5 + TSS region transcription start site region 48636
Tssr53080 5 122131958 to 122131973 15 - TSS region transcription start site region 53080
Tssr53081 5 122131976 to 122131982 6 - TSS region transcription start site region 53081
Tssr53082 5 122131988 to 122131989 1 - TSS region transcription start site region 53082
Tssr48637 5 122149604 to 122149608 4 + TSS region transcription start site region 48637
Cpgi16545 5 122157748 to 122159109 1361 CpG island CpG island 16545
Tssr48638 5 122158265 to 122158340 75 + TSS region transcription start site region 48638
Ppp1cc 5 122158278 to 122175273 16995 + protein coding gene protein phosphatase 1 catalytic subunit gamma
Gm42748 5 122165597 to 122167937 2340 + unclassified gene predicted gene 42748
Tssr48639 5 122168125 to 122168136 11 + TSS region transcription start site region 48639
Tssr48640 5 122171507 to 122171528 21 + TSS region transcription start site region 48640
Tssr48641 5 122182180 to 122182192 12 + TSS region transcription start site region 48641
Tssr48642 5 122206792 to 122206829 37 + TSS region transcription start site region 48642
Hvcn1 5 122206807 to 122242297 35490 + protein coding gene hydrogen voltage-gated channel 1
Tssr48643 5 122209814 to 122209843 29 + TSS region transcription start site region 48643
Tssr48644 5 122209848 to 122209914 66 + TSS region transcription start site region 48644
Tssr48645 5 122209918 to 122209921 3 + TSS region transcription start site region 48645
Tssr48646 5 122209970 to 122209983 13 + TSS region transcription start site region 48646
Tssr48647 5 122210077 to 122210124 47 + TSS region transcription start site region 48647
Tssr48648 5 122210283 to 122210295 12 + TSS region transcription start site region 48648
Tssr48649 5 122210305 to 122210316 11 + TSS region transcription start site region 48649
Tssr48650 5 122210328 to 122210353 25 + TSS region transcription start site region 48650
Tssr48651 5 122210356 to 122210367 11 + TSS region transcription start site region 48651
Tssr48652 5 122210631 to 122210635 4 + TSS region transcription start site region 48652
Tssr48653 5 122219239 to 122219246 7 + TSS region transcription start site region 48653
Tssr48654 5 122219828 to 122219855 27 + TSS region transcription start site region 48654
Tssr48655 5 122224412 to 122224417 5 + TSS region transcription start site region 48655
Tssr48656 5 122226714 to 122226734 20 + TSS region transcription start site region 48656
Tssr48657 5 122226855 to 122226866 11 + TSS region transcription start site region 48657
Tssr48658 5 122227128 to 122227140 12 + TSS region transcription start site region 48658
Tssr48659 5 122231027 to 122231040 13 + TSS region transcription start site region 48659
Tssr48660 5 122232260 to 122232282 22 + TSS region transcription start site region 48660
Tssr48661 5 122232366 to 122232387 21 + TSS region transcription start site region 48661
Tssr48662 5 122233412 to 122233436 24 + TSS region transcription start site region 48662
Tssr48663 5 122233581 to 122233618 37 + TSS region transcription start site region 48663
Tssr53083 5 122234621 to 122234634 13 - TSS region transcription start site region 53083
Tssr53084 5 122234652 to 122234659 7 - TSS region transcription start site region 53084
Tssr48664 5 122235400 to 122235416 16 + TSS region transcription start site region 48664
4930565B19Rik 5 122237847 to 122240188 2341 unclassified gene RIKEN cDNA 4930565B19 gene
Tctn1 5 122239495 to 122264492 24997 - protein coding gene tectonic family member 1
Tssr48665 5 122240655 to 122240671 16 + TSS region transcription start site region 48665
Tssr48666 5 122240725 to 122240757 32 + TSS region transcription start site region 48666
Tssr48667 5 122240764 to 122240826 62 + TSS region transcription start site region 48667
Tssr53085 5 122240846 to 122240863 17 - TSS region transcription start site region 53085
Tssr53086 5 122240917 to 122240940 23 - TSS region transcription start site region 53086
Tssr48668 5 122240932 to 122241013 81 + TSS region transcription start site region 48668
Tssr48669 5 122241023 to 122241063 40 + TSS region transcription start site region 48669
Tssr48670 5 122241157 to 122241176 19 + TSS region transcription start site region 48670
Tssr53087 5 122241234 to 122241249 15 - TSS region transcription start site region 53087
Tssr53088 5 122241382 to 122241407 25 - TSS region transcription start site region 53088
Tssr53089 5 122246481 to 122246485 4 - TSS region transcription start site region 53089
Tssr53090 5 122248084 to 122248093 9 - TSS region transcription start site region 53090
Gm15481 5 122253002 to 122253540 538 + pseudogene predicted gene 15481
Tssr53091 5 122253580 to 122253584 4 - TSS region transcription start site region 53091
Cpgi16546 5 122264020 to 122264540 520 CpG island CpG island 16546
Tssr53092 5 122264378 to 122264455 77 - TSS region transcription start site region 53092
1700112N08Rik 5 122275323 to 122279719 4396 + lncRNA gene RIKEN cDNA 1700112N08 gene
Tssr48671 5 122275426 to 122275456 30 + TSS region transcription start site region 48671
Cpgi16547 5 122284203 to 122285598 1395 CpG island CpG island 16547
Tssr48672 5 122284372 to 122284397 25 + TSS region transcription start site region 48672
Pptc7 5 122284398 to 122324281 39883 + protein coding gene PTC7 protein phosphatase homolog
Gm15842 5 122302422 to 122303039 617 + pseudogene predicted gene 15842
Tssr48673 5 122309151 to 122309173 22 + TSS region transcription start site region 48673
Rad9b 5 122323223 to 122354233 31010 - protein coding gene RAD9 checkpoint clamp component B
Tssr53093 5 122323914 to 122323917 3 - TSS region transcription start site region 53093
Cpgi16548 5 122325087 to 122325277 190 CpG island CpG island 16548
Cpgi16549 5 122353879 to 122355144 1265 CpG island CpG island 16549
Tssr53094 5 122354161 to 122354237 76 - TSS region transcription start site region 53094
Tssr48674 5 122354356 to 122354359 3 + TSS region transcription start site region 48674
Tssr48675 5 122354361 to 122354368 7 + TSS region transcription start site region 48675
Vps29 5 122354377 to 122364975 10598 + protein coding gene VPS29 retromer complex component
Tssr48676 5 122354385 to 122354455 70 + TSS region transcription start site region 48676
Fam216a 5 122364584 to 122371963 7379 - protein coding gene family with sequence similarity 216, member A
D5Mit118 5 122366221 to 122366356 135 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 118