Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:122021783-122242246

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cux2 5 121857962 to 122050417 192455 - protein coding gene cut-like homeobox 2
Gm3970 5 122025330 to 122029697 4367 + antisense lncRNA gene predicted gene 3970
Gm15637 5 122048382 to 122055654 7272 + antisense lncRNA gene predicted gene 15637
Cpgi16539 5 122048947 to 122050896 1949 CpG island CpG island 16539
Tssr53071 5 122049822 to 122049882 60 - TSS region transcription start site region 53071
Tssr53072 5 122050133 to 122050158 25 - TSS region transcription start site region 53072
Tssr53073 5 122050218 to 122050231 13 - TSS region transcription start site region 53073
Cpgi16540 5 122053697 to 122054015 318 CpG island CpG island 16540
Cpgi16541 5 122059171 to 122060047 876 CpG island CpG island 16541
Tssr48613 5 122061437 to 122061448 11 + TSS region transcription start site region 48613
Tssr53074 5 122084900 to 122084906 6 - TSS region transcription start site region 53074
Cpgi16542 5 122091150 to 122091395 245 CpG island CpG island 16542
Tssr48614 5 122093174 to 122093190 16 + TSS region transcription start site region 48614
Gm32672 5 122093214 to 122099354 6140 + lncRNA gene predicted gene, 32672
Tssr48615 5 122093516 to 122093523 7 + TSS region transcription start site region 48615
Tssr48616 5 122093547 to 122093561 14 + TSS region transcription start site region 48616
Tssr48617 5 122093568 to 122093595 27 + TSS region transcription start site region 48617
Tssr48618 5 122093851 to 122093864 13 + TSS region transcription start site region 48618
Tssr48619 5 122100784 to 122100807 23 + TSS region transcription start site region 48619
Tssr48620 5 122100816 to 122100851 35 + TSS region transcription start site region 48620
Myl2 5 122100904 to 122113398 12494 + protein coding gene myosin, light polypeptide 2, regulatory, cardiac, slow
Tssr48621 5 122100944 to 122100958 14 + TSS region transcription start site region 48621
Tssr48622 5 122100972 to 122100986 14 + TSS region transcription start site region 48622
Tssr48623 5 122101146 to 122101159 13 + TSS region transcription start site region 48623
Tssr48624 5 122101163 to 122101177 14 + TSS region transcription start site region 48624
Tssr48625 5 122101777 to 122101799 22 + TSS region transcription start site region 48625
Tssr48626 5 122102650 to 122102659 9 + TSS region transcription start site region 48626
Tssr48627 5 122102670 to 122102734 64 + TSS region transcription start site region 48627
Tssr53075 5 122102725 to 122102765 40 - TSS region transcription start site region 53075
Tssr48628 5 122102848 to 122102881 33 + TSS region transcription start site region 48628
Tssr48629 5 122102896 to 122102921 25 + TSS region transcription start site region 48629
Tssr48630 5 122102970 to 122102975 5 + TSS region transcription start site region 48630
Tssr48631 5 122103147 to 122103167 20 + TSS region transcription start site region 48631
Tssr48632 5 122103168 to 122103187 19 + TSS region transcription start site region 48632
Tssr53076 5 122103874 to 122103899 25 - TSS region transcription start site region 53076
Tssr48633 5 122105886 to 122105893 7 + TSS region transcription start site region 48633
Tssr48634 5 122106782 to 122106809 27 + TSS region transcription start site region 48634
Tssr53077 5 122106792 to 122106803 11 - TSS region transcription start site region 53077
Ccdc63 5 122108052 to 122138083 30031 - protein coding gene coiled-coil domain containing 63
Tssr48635 5 122112180 to 122112225 45 + TSS region transcription start site region 48635
Tssr53078 5 122113606 to 122113617 11 - TSS region transcription start site region 53078
Cpgi16543 5 122129686 to 122129872 186 CpG island CpG island 16543
Tssr53079 5 122130406 to 122130421 15 - TSS region transcription start site region 53079
Cpgi16544 5 122131783 to 122132246 463 CpG island CpG island 16544
Tssr48636 5 122131943 to 122131948 5 + TSS region transcription start site region 48636
Tssr53080 5 122131958 to 122131973 15 - TSS region transcription start site region 53080
Tssr53081 5 122131976 to 122131982 6 - TSS region transcription start site region 53081
Tssr53082 5 122131988 to 122131989 1 - TSS region transcription start site region 53082
Tssr48637 5 122149604 to 122149608 4 + TSS region transcription start site region 48637
Cpgi16545 5 122157748 to 122159109 1361 CpG island CpG island 16545
Tssr48638 5 122158265 to 122158340 75 + TSS region transcription start site region 48638
Ppp1cc 5 122158278 to 122175273 16995 + protein coding gene protein phosphatase 1 catalytic subunit gamma
Gm42748 5 122165597 to 122167937 2340 + unclassified gene predicted gene 42748
Tssr48639 5 122168125 to 122168136 11 + TSS region transcription start site region 48639
Tssr48640 5 122171507 to 122171528 21 + TSS region transcription start site region 48640
Tssr48641 5 122182180 to 122182192 12 + TSS region transcription start site region 48641
Tssr48642 5 122206792 to 122206829 37 + TSS region transcription start site region 48642
Hvcn1 5 122206807 to 122242297 35490 + protein coding gene hydrogen voltage-gated channel 1
Tssr48643 5 122209814 to 122209843 29 + TSS region transcription start site region 48643
Tssr48644 5 122209848 to 122209914 66 + TSS region transcription start site region 48644
Tssr48645 5 122209918 to 122209921 3 + TSS region transcription start site region 48645
Tssr48646 5 122209970 to 122209983 13 + TSS region transcription start site region 48646
Tssr48647 5 122210077 to 122210124 47 + TSS region transcription start site region 48647
Tssr48648 5 122210283 to 122210295 12 + TSS region transcription start site region 48648
Tssr48649 5 122210305 to 122210316 11 + TSS region transcription start site region 48649
Tssr48650 5 122210328 to 122210353 25 + TSS region transcription start site region 48650
Tssr48651 5 122210356 to 122210367 11 + TSS region transcription start site region 48651
Tssr48652 5 122210631 to 122210635 4 + TSS region transcription start site region 48652
Tssr48653 5 122219239 to 122219246 7 + TSS region transcription start site region 48653
Tssr48654 5 122219828 to 122219855 27 + TSS region transcription start site region 48654
Tssr48655 5 122224412 to 122224417 5 + TSS region transcription start site region 48655
Tssr48656 5 122226714 to 122226734 20 + TSS region transcription start site region 48656
Tssr48657 5 122226855 to 122226866 11 + TSS region transcription start site region 48657
Tssr48658 5 122227128 to 122227140 12 + TSS region transcription start site region 48658
Tssr48659 5 122231027 to 122231040 13 + TSS region transcription start site region 48659
Tssr48660 5 122232260 to 122232282 22 + TSS region transcription start site region 48660
Tssr48661 5 122232366 to 122232387 21 + TSS region transcription start site region 48661
Tssr48662 5 122233412 to 122233436 24 + TSS region transcription start site region 48662
Tssr48663 5 122233581 to 122233618 37 + TSS region transcription start site region 48663
Tssr53083 5 122234621 to 122234634 13 - TSS region transcription start site region 53083
Tssr53084 5 122234652 to 122234659 7 - TSS region transcription start site region 53084
Tssr48664 5 122235400 to 122235416 16 + TSS region transcription start site region 48664
4930565B19Rik 5 122237847 to 122240188 2341 unclassified gene RIKEN cDNA 4930565B19 gene
Tctn1 5 122239495 to 122264492 24997 - protein coding gene tectonic family member 1
Tssr48665 5 122240655 to 122240671 16 + TSS region transcription start site region 48665
Tssr48666 5 122240725 to 122240757 32 + TSS region transcription start site region 48666
Tssr48667 5 122240764 to 122240826 62 + TSS region transcription start site region 48667
Tssr53085 5 122240846 to 122240863 17 - TSS region transcription start site region 53085
Tssr53086 5 122240917 to 122240940 23 - TSS region transcription start site region 53086
Tssr48668 5 122240932 to 122241013 81 + TSS region transcription start site region 48668
Tssr48669 5 122241023 to 122241063 40 + TSS region transcription start site region 48669
Tssr48670 5 122241157 to 122241176 19 + TSS region transcription start site region 48670
Tssr53087 5 122241234 to 122241249 15 - TSS region transcription start site region 53087
Tssr53088 5 122241382 to 122241407 25 - TSS region transcription start site region 53088