Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:121961878-122836181

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267 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cux2 5 121857962 to 122050417 192455 - protein coding gene cut-like homeobox 2
Tssr48612 5 121981632 to 121981634 2 + TSS region transcription start site region 48612
Tssr53068 5 122002311 to 122002320 9 - TSS region transcription start site region 53068
Tssr53069 5 122002340 to 122002368 28 - TSS region transcription start site region 53069
Tssr53070 5 122019395 to 122019429 34 - TSS region transcription start site region 53070
Gm3970 5 122025330 to 122029697 4367 + antisense lncRNA gene predicted gene 3970
Gm15637 5 122048382 to 122055654 7272 + antisense lncRNA gene predicted gene 15637
Cpgi16539 5 122048947 to 122050896 1949 CpG island CpG island 16539
Tssr53071 5 122049822 to 122049882 60 - TSS region transcription start site region 53071
Tssr53072 5 122050133 to 122050158 25 - TSS region transcription start site region 53072
Tssr53073 5 122050218 to 122050231 13 - TSS region transcription start site region 53073
Cpgi16540 5 122053697 to 122054015 318 CpG island CpG island 16540
Cpgi16541 5 122059171 to 122060047 876 CpG island CpG island 16541
Tssr48613 5 122061437 to 122061448 11 + TSS region transcription start site region 48613
Tssr53074 5 122084900 to 122084906 6 - TSS region transcription start site region 53074
Cpgi16542 5 122091150 to 122091395 245 CpG island CpG island 16542
Tssr48614 5 122093174 to 122093190 16 + TSS region transcription start site region 48614
Gm32672 5 122093214 to 122099354 6140 + lncRNA gene predicted gene, 32672
Tssr48615 5 122093516 to 122093523 7 + TSS region transcription start site region 48615
Tssr48616 5 122093547 to 122093561 14 + TSS region transcription start site region 48616
Tssr48617 5 122093568 to 122093595 27 + TSS region transcription start site region 48617
Tssr48618 5 122093851 to 122093864 13 + TSS region transcription start site region 48618
Tssr48619 5 122100784 to 122100807 23 + TSS region transcription start site region 48619
Tssr48620 5 122100816 to 122100851 35 + TSS region transcription start site region 48620
Myl2 5 122100904 to 122113398 12494 + protein coding gene myosin, light polypeptide 2, regulatory, cardiac, slow
Tssr48621 5 122100944 to 122100958 14 + TSS region transcription start site region 48621
Tssr48622 5 122100972 to 122100986 14 + TSS region transcription start site region 48622
Tssr48623 5 122101146 to 122101159 13 + TSS region transcription start site region 48623
Tssr48624 5 122101163 to 122101177 14 + TSS region transcription start site region 48624
Tssr48625 5 122101777 to 122101799 22 + TSS region transcription start site region 48625
Tssr48626 5 122102650 to 122102659 9 + TSS region transcription start site region 48626
Tssr48627 5 122102670 to 122102734 64 + TSS region transcription start site region 48627
Tssr53075 5 122102725 to 122102765 40 - TSS region transcription start site region 53075
Tssr48628 5 122102848 to 122102881 33 + TSS region transcription start site region 48628
Tssr48629 5 122102896 to 122102921 25 + TSS region transcription start site region 48629
Tssr48630 5 122102970 to 122102975 5 + TSS region transcription start site region 48630
Tssr48631 5 122103147 to 122103167 20 + TSS region transcription start site region 48631
Tssr48632 5 122103168 to 122103187 19 + TSS region transcription start site region 48632
Tssr53076 5 122103874 to 122103899 25 - TSS region transcription start site region 53076
Tssr48633 5 122105886 to 122105893 7 + TSS region transcription start site region 48633
Tssr48634 5 122106782 to 122106809 27 + TSS region transcription start site region 48634
Tssr53077 5 122106792 to 122106803 11 - TSS region transcription start site region 53077
Ccdc63 5 122108052 to 122138083 30031 - protein coding gene coiled-coil domain containing 63
Tssr48635 5 122112180 to 122112225 45 + TSS region transcription start site region 48635
Tssr53078 5 122113606 to 122113617 11 - TSS region transcription start site region 53078
Cpgi16543 5 122129686 to 122129872 186 CpG island CpG island 16543
Tssr53079 5 122130406 to 122130421 15 - TSS region transcription start site region 53079
Cpgi16544 5 122131783 to 122132246 463 CpG island CpG island 16544
Tssr48636 5 122131943 to 122131948 5 + TSS region transcription start site region 48636
Tssr53080 5 122131958 to 122131973 15 - TSS region transcription start site region 53080
Tssr53081 5 122131976 to 122131982 6 - TSS region transcription start site region 53081
Tssr53082 5 122131988 to 122131989 1 - TSS region transcription start site region 53082
Tssr48637 5 122149604 to 122149608 4 + TSS region transcription start site region 48637
Cpgi16545 5 122157748 to 122159109 1361 CpG island CpG island 16545
Tssr48638 5 122158265 to 122158340 75 + TSS region transcription start site region 48638
Ppp1cc 5 122158278 to 122175273 16995 + protein coding gene protein phosphatase 1 catalytic subunit gamma
Gm42748 5 122165597 to 122167937 2340 + unclassified gene predicted gene 42748
Tssr48639 5 122168125 to 122168136 11 + TSS region transcription start site region 48639
Tssr48640 5 122171507 to 122171528 21 + TSS region transcription start site region 48640
Tssr48641 5 122182180 to 122182192 12 + TSS region transcription start site region 48641
Tssr48642 5 122206792 to 122206829 37 + TSS region transcription start site region 48642
Hvcn1 5 122206807 to 122242297 35490 + protein coding gene hydrogen voltage-gated channel 1
Tssr48643 5 122209814 to 122209843 29 + TSS region transcription start site region 48643
Tssr48644 5 122209848 to 122209914 66 + TSS region transcription start site region 48644
Tssr48645 5 122209918 to 122209921 3 + TSS region transcription start site region 48645
Tssr48646 5 122209970 to 122209983 13 + TSS region transcription start site region 48646
Tssr48647 5 122210077 to 122210124 47 + TSS region transcription start site region 48647
Tssr48648 5 122210283 to 122210295 12 + TSS region transcription start site region 48648
Tssr48649 5 122210305 to 122210316 11 + TSS region transcription start site region 48649
Tssr48650 5 122210328 to 122210353 25 + TSS region transcription start site region 48650
Tssr48651 5 122210356 to 122210367 11 + TSS region transcription start site region 48651
Tssr48652 5 122210631 to 122210635 4 + TSS region transcription start site region 48652
Tssr48653 5 122219239 to 122219246 7 + TSS region transcription start site region 48653
Tssr48654 5 122219828 to 122219855 27 + TSS region transcription start site region 48654
Tssr48655 5 122224412 to 122224417 5 + TSS region transcription start site region 48655
Tssr48656 5 122226714 to 122226734 20 + TSS region transcription start site region 48656
Tssr48657 5 122226855 to 122226866 11 + TSS region transcription start site region 48657
Tssr48658 5 122227128 to 122227140 12 + TSS region transcription start site region 48658
Tssr48659 5 122231027 to 122231040 13 + TSS region transcription start site region 48659
Tssr48660 5 122232260 to 122232282 22 + TSS region transcription start site region 48660
Tssr48661 5 122232366 to 122232387 21 + TSS region transcription start site region 48661
Tssr48662 5 122233412 to 122233436 24 + TSS region transcription start site region 48662
Tssr48663 5 122233581 to 122233618 37 + TSS region transcription start site region 48663
Tssr53083 5 122234621 to 122234634 13 - TSS region transcription start site region 53083
Tssr53084 5 122234652 to 122234659 7 - TSS region transcription start site region 53084
Tssr48664 5 122235400 to 122235416 16 + TSS region transcription start site region 48664
4930565B19Rik 5 122237847 to 122240188 2341 unclassified gene RIKEN cDNA 4930565B19 gene
Tctn1 5 122239495 to 122264492 24997 - protein coding gene tectonic family member 1
Tssr48665 5 122240655 to 122240671 16 + TSS region transcription start site region 48665
Tssr48666 5 122240725 to 122240757 32 + TSS region transcription start site region 48666
Tssr48667 5 122240764 to 122240826 62 + TSS region transcription start site region 48667
Tssr53085 5 122240846 to 122240863 17 - TSS region transcription start site region 53085
Tssr53086 5 122240917 to 122240940 23 - TSS region transcription start site region 53086
Tssr48668 5 122240932 to 122241013 81 + TSS region transcription start site region 48668
Tssr48669 5 122241023 to 122241063 40 + TSS region transcription start site region 48669
Tssr48670 5 122241157 to 122241176 19 + TSS region transcription start site region 48670
Tssr53087 5 122241234 to 122241249 15 - TSS region transcription start site region 53087
Tssr53088 5 122241382 to 122241407 25 - TSS region transcription start site region 53088
Tssr53089 5 122246481 to 122246485 4 - TSS region transcription start site region 53089
Tssr53090 5 122248084 to 122248093 9 - TSS region transcription start site region 53090
Gm15481 5 122253002 to 122253540 538 + pseudogene predicted gene 15481
Tssr53091 5 122253580 to 122253584 4 - TSS region transcription start site region 53091
Cpgi16546 5 122264020 to 122264540 520 CpG island CpG island 16546
Tssr53092 5 122264378 to 122264455 77 - TSS region transcription start site region 53092
1700112N08Rik 5 122275323 to 122279719 4396 + lncRNA gene RIKEN cDNA 1700112N08 gene
Tssr48671 5 122275426 to 122275456 30 + TSS region transcription start site region 48671
Cpgi16547 5 122284203 to 122285598 1395 CpG island CpG island 16547
Tssr48672 5 122284372 to 122284397 25 + TSS region transcription start site region 48672
Pptc7 5 122284398 to 122324281 39883 + protein coding gene PTC7 protein phosphatase homolog
Gm15842 5 122302422 to 122303039 617 + pseudogene predicted gene 15842
Tssr48673 5 122309151 to 122309173 22 + TSS region transcription start site region 48673
Rad9b 5 122323223 to 122354233 31010 - protein coding gene RAD9 checkpoint clamp component B
Tssr53093 5 122323914 to 122323917 3 - TSS region transcription start site region 53093
Cpgi16548 5 122325087 to 122325277 190 CpG island CpG island 16548
Cpgi16549 5 122353879 to 122355144 1265 CpG island CpG island 16549
Tssr53094 5 122354161 to 122354237 76 - TSS region transcription start site region 53094
Tssr48674 5 122354356 to 122354359 3 + TSS region transcription start site region 48674
Tssr48675 5 122354361 to 122354368 7 + TSS region transcription start site region 48675
Vps29 5 122354377 to 122364975 10598 + protein coding gene VPS29 retromer complex component
Tssr48676 5 122354385 to 122354455 70 + TSS region transcription start site region 48676
Fam216a 5 122364584 to 122371963 7379 - protein coding gene family with sequence similarity 216, member A
D5Mit118 5 122366221 to 122366356 135 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 118
Cpgi16550 5 122371638 to 122372909 1271 CpG island CpG island 16550
Tssr48677 5 122371875 to 122371887 12 + TSS region transcription start site region 48677
Tssr53095 5 122371975 to 122371980 5 - TSS region transcription start site region 53095
Tssr53096 5 122371987 to 122371998 11 - TSS region transcription start site region 53096
Tssr53097 5 122372012 to 122372070 58 - TSS region transcription start site region 53097
Tssr53098 5 122372230 to 122372390 160 - TSS region transcription start site region 53098
Tssr48678 5 122372445 to 122372477 32 + TSS region transcription start site region 48678
Tssr48679 5 122372494 to 122372513 19 + TSS region transcription start site region 48679
Gpn3 5 122372508 to 122382771 10263 + protein coding gene GPN-loop GTPase 3
Tssr48680 5 122372515 to 122372604 89 + TSS region transcription start site region 48680
Tssr48681 5 122372608 to 122372623 15 + TSS region transcription start site region 48681
Gm42830 5 122377408 to 122377720 312 + unclassified gene predicted gene 42830
Gm32853 5 122380057 to 122394812 14755 - lncRNA gene predicted gene, 32853
Cpgi16551 5 122391714 to 122392713 999 CpG island CpG island 16551
Tssr53099 5 122391741 to 122391762 21 - TSS region transcription start site region 53099
Arpc3 5 122391878 to 122406181 14303 + protein coding gene actin related protein 2/3 complex, subunit 3
Tssr48682 5 122391890 to 122391928 38 + TSS region transcription start site region 48682
Tssr48683 5 122391942 to 122391958 16 + TSS region transcription start site region 48683
Tssr48684 5 122391959 to 122391960 1 + TSS region transcription start site region 48684
Tssr48685 5 122392270 to 122392274 4 + TSS region transcription start site region 48685
Tssr48686 5 122396747 to 122396753 6 + TSS region transcription start site region 48686
Tssr48687 5 122396838 to 122396895 57 + TSS region transcription start site region 48687
Tssr53100 5 122396890 to 122396903 13 - TSS region transcription start site region 53100
Tssr53101 5 122397013 to 122397025 12 - TSS region transcription start site region 53101
Tssr48688 5 122401629 to 122401650 21 + TSS region transcription start site region 48688
Tssr48689 5 122403356 to 122403404 48 + TSS region transcription start site region 48689
Tssr48690 5 122404140 to 122404195 55 + TSS region transcription start site region 48690
Tssr48691 5 122406074 to 122406115 41 + TSS region transcription start site region 48691
Gm42829 5 122408490 to 122411074 2584 + sense intronic lncRNA gene predicted gene 42829
D730048M23Rik 5 122419283 to 122420599 1316 unclassified gene RIKEN cDNA D730048M23 gene
Cpgi16552 5 122421970 to 122423116 1146 CpG island CpG island 16552
Tssr48692 5 122422440 to 122422495 55 + TSS region transcription start site region 48692
Anapc7 5 122422444 to 122444912 22468 + protein coding gene anaphase promoting complex subunit 7
Tssr48693 5 122422496 to 122422520 24 + TSS region transcription start site region 48693
Gm15846 5 122438596 to 122438915 319 - pseudogene predicted gene 15846
Atp2a2 5 122453513 to 122502225 48712 - protein coding gene ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
Tssr53102 5 122456929 to 122456959 30 - TSS region transcription start site region 53102
Tssr53103 5 122456986 to 122456999 13 - TSS region transcription start site region 53103
Tssr53104 5 122457026 to 122457047 21 - TSS region transcription start site region 53104
Tssr53105 5 122458483 to 122458501 18 - TSS region transcription start site region 53105
Tssr53106 5 122458517 to 122458536 19 - TSS region transcription start site region 53106
Tssr53107 5 122458542 to 122458551 9 - TSS region transcription start site region 53107
Tssr1625 5 122458556 to 122458567 11 - TSS region transcription start site region 1625
Tssr53108 5 122459495 to 122459532 37 - TSS region transcription start site region 53108
Tssr53109 5 122459538 to 122459559 21 - TSS region transcription start site region 53109
Tssr53110 5 122459604 to 122459620 16 - TSS region transcription start site region 53110
Tssr53111 5 122459625 to 122459636 11 - TSS region transcription start site region 53111
Tssr53112 5 122460111 to 122460148 37 - TSS region transcription start site region 53112
Tssr53113 5 122460696 to 122460713 17 - TSS region transcription start site region 53113
Tssr53114 5 122460938 to 122460954 16 - TSS region transcription start site region 53114
Tssr53115 5 122465975 to 122465992 17 - TSS region transcription start site region 53115
Tssr53116 5 122469484 to 122469542 58 - TSS region transcription start site region 53116
Tssr53117 5 122471207 to 122471256 49 - TSS region transcription start site region 53117
Tssr53118 5 122479566 to 122479570 4 - TSS region transcription start site region 53118
Tssr53119 5 122480407 to 122480415 8 - TSS region transcription start site region 53119
Gm43359 5 122482800 to 122484999 2199 - unclassified gene predicted gene 43359
Tssr53120 5 122486288 to 122486309 21 - TSS region transcription start site region 53120
Tssr48694 5 122489236 to 122489250 14 + TSS region transcription start site region 48694
Tssr53121 5 122489313 to 122489326 13 - TSS region transcription start site region 53121
Tssr53122 5 122491707 to 122491739 32 - TSS region transcription start site region 53122
Tssr48695 5 122491733 to 122491740 7 + TSS region transcription start site region 48695
Tssr48696 5 122491741 to 122491763 22 + TSS region transcription start site region 48696
Tssr53123 5 122491752 to 122491767 15 - TSS region transcription start site region 53123
Gm43360 5 122492022 to 122494908 2886 - unclassified gene predicted gene 43360
Gm43361 5 122496159 to 122500848 4689 + unclassified gene predicted gene 43361
Tssr53124 5 122500332 to 122500341 9 - TSS region transcription start site region 53124
Tssr53125 5 122500364 to 122500375 11 - TSS region transcription start site region 53125
Tssr48697 5 122500726 to 122500735 9 + TSS region transcription start site region 48697
Tssr53126 5 122500824 to 122500833 9 - TSS region transcription start site region 53126
Tssr1626 5 122500929 to 122500931 2 + TSS region transcription start site region 1626
Cpgi16553 5 122501063 to 122503058 1995 CpG island CpG island 16553
Tssr53127 5 122501215 to 122501223 8 - TSS region transcription start site region 53127
Tssr53128 5 122501250 to 122501265 15 - TSS region transcription start site region 53128
Tssr53129 5 122501271 to 122501281 10 - TSS region transcription start site region 53129
Tssr48698 5 122501560 to 122501613 53 + TSS region transcription start site region 48698
Tssr48699 5 122501708 to 122501735 27 + TSS region transcription start site region 48699
Tssr53130 5 122501777 to 122501788 11 - TSS region transcription start site region 53130
Tssr48700 5 122501781 to 122501810 29 + TSS region transcription start site region 48700