Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 5:121661609-121864950

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57 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Brap 5 121660563 to 121687249 26686 + protein coding gene BRCA1 associated protein
Tssr53052 5 121673987 to 121673989 2 - TSS region transcription start site region 53052
Tssr48590 5 121686628 to 121686630 2 + TSS region transcription start site region 48590
Cpgi16530 5 121692506 to 121692714 208 CpG island CpG island 16530
1700064N11Rik 5 121710786 to 121711480 694 lncRNA gene RIKEN cDNA 1700064N11 gene
Cpgi16531 5 121711029 to 121713322 2293 CpG island CpG island 16531
Tssr53053 5 121711455 to 121711479 24 - TSS region transcription start site region 53053
Atxn2 5 121711609 to 121814950 103341 + protein coding gene ataxin 2
Tssr48591 5 121711785 to 121711859 74 + TSS region transcription start site region 48591
Tssr48592 5 121711908 to 121711915 7 + TSS region transcription start site region 48592
Tssr48593 5 121712039 to 121712050 11 + TSS region transcription start site region 48593
Tssr48594 5 121712068 to 121712071 3 + TSS region transcription start site region 48594
Tssr48595 5 121712467 to 121712475 8 + TSS region transcription start site region 48595
Tssr48596 5 121714175 to 121714180 5 + TSS region transcription start site region 48596
Gm43571 5 121715109 to 121718206 3097 + unclassified gene predicted gene 43571
Tssr48597 5 121715127 to 121715131 4 + TSS region transcription start site region 48597
Gm16552 5 121717666 to 121727403 9737 - lncRNA gene predicted gene 16552
Tssr48598 5 121738831 to 121738864 33 + TSS region transcription start site region 48598
Gm42866 5 121742417 to 121745720 3303 + unclassified gene predicted gene 42866
Tssr48599 5 121742440 to 121742446 6 + TSS region transcription start site region 48599
Tssr48600 5 121748169 to 121748173 4 + TSS region transcription start site region 48600
Tssr48601 5 121753055 to 121753059 4 + TSS region transcription start site region 48601
Tssr48602 5 121787319 to 121787342 23 + TSS region transcription start site region 48602
Tssr48603 5 121797712 to 121797725 13 + TSS region transcription start site region 48603
Sh2b3 5 121815488 to 121837646 22158 - protein coding gene SH2B adaptor protein 3
Mir7031 5 121819209 to 121819273 64 - miRNA gene microRNA 7031
Tssr53054 5 121821524 to 121821529 5 - TSS region transcription start site region 53054
Cpgi16532 5 121828104 to 121829320 1216 CpG island CpG island 16532
Tssr48604 5 121835192 to 121835197 5 + TSS region transcription start site region 48604
1700008B11Rik 5 121835195 to 121835828 633 + lncRNA gene RIKEN cDNA 1700008B11 gene
Tssr48605 5 121835226 to 121835232 6 + TSS region transcription start site region 48605
Cpgi16533 5 121835954 to 121837806 1852 CpG island CpG island 16533
Tssr53055 5 121836247 to 121836279 32 - TSS region transcription start site region 53055
Tssr53056 5 121836753 to 121836764 11 - TSS region transcription start site region 53056
Tssr53057 5 121836787 to 121836798 11 - TSS region transcription start site region 53057
Tssr53058 5 121836810 to 121836845 35 - TSS region transcription start site region 53058
Tssr53059 5 121836852 to 121836880 28 - TSS region transcription start site region 53059
Tssr48606 5 121837240 to 121837255 15 + TSS region transcription start site region 48606
Tssr48607 5 121837258 to 121837275 17 + TSS region transcription start site region 48607
Tssr48608 5 121837283 to 121837294 11 + TSS region transcription start site region 48608
Tssr53060 5 121837602 to 121837606 4 - TSS region transcription start site region 53060
Tssr53061 5 121837613 to 121837689 76 - TSS region transcription start site region 53061
Gm32422 5 121838161 to 121839260 1099 + lncRNA gene predicted gene, 32422
Cpgi16534 5 121838440 to 121839106 666 CpG island CpG island 16534
Cpgi16535 5 121842606 to 121843311 705 CpG island CpG island 16535
4933437G19Rik 5 121847667 to 121848844 1177 - lncRNA gene RIKEN cDNA 4933437G19 gene
Cpgi16536 5 121848690 to 121849362 672 CpG island CpG island 16536
Tssr53062 5 121848838 to 121848864 26 - TSS region transcription start site region 53062
Tssr48609 5 121848975 to 121848982 7 + TSS region transcription start site region 48609
Tssr48610 5 121848987 to 121849002 15 + TSS region transcription start site region 48610
Pheta1 5 121848997 to 121854604 5607 + protein coding gene PH domain containing endocytic trafficking adaptor 1
Tssr48611 5 121849021 to 121849037 16 + TSS region transcription start site region 48611
Cux2 5 121857962 to 122050415 192453 - protein coding gene cut-like homeobox 2
Tssr53063 5 121859147 to 121859150 3 - TSS region transcription start site region 53063
Tssr53064 5 121859980 to 121859984 4 - TSS region transcription start site region 53064
Tssr53065 5 121860103 to 121860106 3 - TSS region transcription start site region 53065
Cpgi16537 5 121864597 to 121865021 424 CpG island CpG island 16537