Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:121374175-122054180

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152 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trafd1 5 121371725 to 121385627 13902 - protein coding gene TRAF type zinc finger domain containing 1
Tssr53020 5 121374351 to 121374413 62 - TSS region transcription start site region 53020
Tssr53021 5 121374695 to 121374701 6 - TSS region transcription start site region 53021
Gm42917 5 121384010 to 121393465 9455 + antisense lncRNA gene predicted gene 42917
Tssr53022 5 121384069 to 121384117 48 - TSS region transcription start site region 53022
Tssr53023 5 121384533 to 121384560 27 - TSS region transcription start site region 53023
Tssr53024 5 121384850 to 121384854 4 - TSS region transcription start site region 53024
Cpgi16523 5 121384902 to 121386002 1100 CpG island CpG island 16523
Tssr53025 5 121385387 to 121385455 68 - TSS region transcription start site region 53025
Tssr48570 5 121385448 to 121385453 5 + TSS region transcription start site region 48570
Tssr48571 5 121385474 to 121385479 5 + TSS region transcription start site region 48571
Tssr48572 5 121385501 to 121385532 31 + TSS region transcription start site region 48572
Gm42918 5 121385522 to 121387101 1579 + antisense lncRNA gene predicted gene 42918
Tssr53026 5 121385572 to 121385590 18 - TSS region transcription start site region 53026
Tssr53027 5 121385599 to 121385619 20 - TSS region transcription start site region 53027
Gm42020 5 121385671 to 121396387 10716 + lncRNA gene predicted gene, 42020
Cpgi16524 5 121397581 to 121398783 1202 CpG island CpG island 16524
Naa25 5 121397941 to 121442549 44608 + protein coding gene N(alpha)-acetyltransferase 25, NatB auxiliary subunit
Tssr48573 5 121397965 to 121398004 39 + TSS region transcription start site region 48573
Tssr48574 5 121399087 to 121399092 5 + TSS region transcription start site region 48574
Tssr48575 5 121399825 to 121399869 44 + TSS region transcription start site region 48575
Gm43420 5 121402658 to 121404514 1856 + unclassified gene predicted gene 43420
Erp29 5 121444753 to 121452474 7721 - protein coding gene endoplasmic reticulum protein 29
Tssr53028 5 121445383 to 121445415 32 - TSS region transcription start site region 53028
Tssr53029 5 121450135 to 121450152 17 - TSS region transcription start site region 53029
Tssr53030 5 121451303 to 121451315 12 - TSS region transcription start site region 53030
Cpgi16525 5 121451688 to 121453063 1375 CpG island CpG island 16525
Tssr48576 5 121452165 to 121452179 14 + TSS region transcription start site region 48576
Tssr53031 5 121452339 to 121452417 78 - TSS region transcription start site region 53031
Tssr53032 5 121452462 to 121452518 56 - TSS region transcription start site region 53032
Tssr48577 5 121452606 to 121452665 59 + TSS region transcription start site region 48577
Tssr48578 5 121452689 to 121452714 25 + TSS region transcription start site region 48578
Tmem116 5 121452709 to 121517910 65201 + protein coding gene transmembrane protein 116
Tssr48579 5 121463150 to 121463189 39 + TSS region transcription start site region 48579
Tssr48580 5 121463193 to 121463209 16 + TSS region transcription start site region 48580
Tssr48581 5 121463211 to 121463222 11 + TSS region transcription start site region 48581
Gm15546 5 121471563 to 121472388 825 - pseudogene predicted gene 15546
Tssr48582 5 121483784 to 121483796 12 + TSS region transcription start site region 48582
Adam1b 5 121500097 to 121502980 2883 - protein coding gene a disintegrin and metallopeptidase domain 1b
Tssr53033 5 121503397 to 121503440 43 - TSS region transcription start site region 53033
4930477O15Rik 5 121503513 to 121504601 1088 + unclassified gene RIKEN cDNA 4930477O15 gene
Tssr48583 5 121506908 to 121506912 4 + TSS region transcription start site region 48583
Adam1a 5 121518604 to 121521695 3091 - protein coding gene a disintegrin and metallopeptidase domain 1a
Gm42878 5 121518613 to 121545482 26869 - protein coding gene predicted gene 42878
Tssr53034 5 121521560 to 121521563 3 - TSS region transcription start site region 53034
Tssr53035 5 121521573 to 121521599 26 - TSS region transcription start site region 53035
Mapkapk5 5 121525051 to 121545892 20841 - protein coding gene MAP kinase-activated protein kinase 5
Tssr48584 5 121525518 to 121525563 45 + TSS region transcription start site region 48584
Tssr53036 5 121527224 to 121527258 34 - TSS region transcription start site region 53036
Tssr53037 5 121527260 to 121527269 9 - TSS region transcription start site region 53037
Gm15547 5 121530563 to 121530895 332 - pseudogene predicted gene 15547
Cpgi16526 5 121544747 to 121546319 1572 CpG island CpG island 16526
Tssr53038 5 121545713 to 121545748 35 - TSS region transcription start site region 53038
Aldh2 5 121566027 to 121593824 27797 - protein coding gene aldehyde dehydrogenase 2, mitochondrial
Tssr48585 5 121567703 to 121567726 23 + TSS region transcription start site region 48585
Tssr53039 5 121567799 to 121567814 15 - TSS region transcription start site region 53039
Alpq7 5 121567876 to 121567876 0 QTL alcohol preference QTL 7
Tssr53040 5 121568989 to 121569002 13 - TSS region transcription start site region 53040
Tssr53041 5 121572114 to 121572125 11 - TSS region transcription start site region 53041
Tssr53042 5 121572709 to 121572720 11 - TSS region transcription start site region 53042
Tssr53043 5 121576008 to 121576035 27 - TSS region transcription start site region 53043
Cpgi16527 5 121593014 to 121593859 845 CpG island CpG island 16527
Tssr53044 5 121593482 to 121593493 11 - TSS region transcription start site region 53044
Tssr53045 5 121593552 to 121593603 51 - TSS region transcription start site region 53045
Gm42879 5 121593695 to 121595908 2213 + unclassified gene predicted gene 42879
Tssr53046 5 121593773 to 121593789 16 - TSS region transcription start site region 53046
Acad12 5 121598277 to 121618938 20661 - protein coding gene acyl-Coenzyme A dehydrogenase family, member 12
Cpgi16528 5 121618653 to 121619503 850 CpG island CpG island 16528
Tssr53047 5 121618839 to 121618862 23 - TSS region transcription start site region 53047
Tssr53048 5 121618865 to 121618925 60 - TSS region transcription start site region 53048
Tssr48586 5 121619032 to 121619087 55 + TSS region transcription start site region 48586
Acad10 5 121621026 to 121660510 39484 - protein coding gene acyl-Coenzyme A dehydrogenase family, member 10
Cpgi16529 5 121660119 to 121661387 1268 CpG island CpG island 16529
Tssr53049 5 121660378 to 121660397 19 - TSS region transcription start site region 53049
Tssr53050 5 121660410 to 121660419 9 - TSS region transcription start site region 53050
Tssr1624 5 121660442 to 121660476 34 - TSS region transcription start site region 1624
Tssr53051 5 121660477 to 121660519 42 - TSS region transcription start site region 53051
Tssr48587 5 121660528 to 121660631 103 + TSS region transcription start site region 48587
Brap 5 121660563 to 121687249 26686 + protein coding gene BRCA1 associated protein
Tssr48588 5 121660642 to 121660645 3 + TSS region transcription start site region 48588
Tssr48589 5 121660877 to 121660896 19 + TSS region transcription start site region 48589
Tssr53052 5 121673987 to 121673989 2 - TSS region transcription start site region 53052
Tssr48590 5 121686628 to 121686630 2 + TSS region transcription start site region 48590
Cpgi16530 5 121692506 to 121692714 208 CpG island CpG island 16530
1700064N11Rik 5 121710786 to 121711480 694 unclassified gene RIKEN cDNA 1700064N11 gene
Cpgi16531 5 121711029 to 121713322 2293 CpG island CpG island 16531
Tssr53053 5 121711455 to 121711479 24 - TSS region transcription start site region 53053
Atxn2 5 121711609 to 121814950 103341 + protein coding gene ataxin 2
Tssr48591 5 121711785 to 121711859 74 + TSS region transcription start site region 48591
Tssr48592 5 121711908 to 121711915 7 + TSS region transcription start site region 48592
Tssr48593 5 121712039 to 121712050 11 + TSS region transcription start site region 48593
Tssr48594 5 121712068 to 121712071 3 + TSS region transcription start site region 48594
Tssr48595 5 121712467 to 121712475 8 + TSS region transcription start site region 48595
Tssr48596 5 121714175 to 121714180 5 + TSS region transcription start site region 48596
Gm43571 5 121715109 to 121718206 3097 + unclassified gene predicted gene 43571
Tssr48597 5 121715127 to 121715131 4 + TSS region transcription start site region 48597
Gm16552 5 121717666 to 121727403 9737 - antisense lncRNA gene predicted gene 16552
Tssr48598 5 121738831 to 121738864 33 + TSS region transcription start site region 48598
Gm42866 5 121742417 to 121745720 3303 + unclassified gene predicted gene 42866
Tssr48599 5 121742440 to 121742446 6 + TSS region transcription start site region 48599
Tssr48600 5 121748169 to 121748173 4 + TSS region transcription start site region 48600
Tssr48601 5 121753055 to 121753059 4 + TSS region transcription start site region 48601
Tssr48602 5 121787319 to 121787342 23 + TSS region transcription start site region 48602
Tssr48603 5 121797712 to 121797725 13 + TSS region transcription start site region 48603
Sh2b3 5 121815488 to 121837646 22158 - protein coding gene SH2B adaptor protein 3
Mir7031 5 121819209 to 121819273 64 - miRNA gene microRNA 7031
Tssr53054 5 121821524 to 121821529 5 - TSS region transcription start site region 53054
Cpgi16532 5 121828104 to 121829320 1216 CpG island CpG island 16532
Tssr48604 5 121835192 to 121835197 5 + TSS region transcription start site region 48604
1700008B11Rik 5 121835195 to 121835828 633 + antisense lncRNA gene RIKEN cDNA 1700008B11 gene
Tssr48605 5 121835226 to 121835232 6 + TSS region transcription start site region 48605
Cpgi16533 5 121835954 to 121837806 1852 CpG island CpG island 16533
Tssr53055 5 121836247 to 121836279 32 - TSS region transcription start site region 53055
Tssr53056 5 121836753 to 121836764 11 - TSS region transcription start site region 53056
Tssr53057 5 121836787 to 121836798 11 - TSS region transcription start site region 53057
Tssr53058 5 121836810 to 121836845 35 - TSS region transcription start site region 53058
Tssr53059 5 121836852 to 121836880 28 - TSS region transcription start site region 53059
Tssr48606 5 121837240 to 121837255 15 + TSS region transcription start site region 48606
Tssr48607 5 121837258 to 121837275 17 + TSS region transcription start site region 48607
Tssr48608 5 121837283 to 121837294 11 + TSS region transcription start site region 48608
Tssr53060 5 121837602 to 121837606 4 - TSS region transcription start site region 53060
Tssr53061 5 121837613 to 121837689 76 - TSS region transcription start site region 53061
Gm32422 5 121838129 to 121839260 1131 + lncRNA gene predicted gene, 32422
Cpgi16534 5 121838440 to 121839106 666 CpG island CpG island 16534
Cpgi16535 5 121842606 to 121843311 705 CpG island CpG island 16535
4933437G19Rik 5 121847667 to 121848844 1177 - unclassified gene RIKEN cDNA 4933437G19 gene
Cpgi16536 5 121848690 to 121849362 672 CpG island CpG island 16536
Tssr53062 5 121848838 to 121848864 26 - TSS region transcription start site region 53062
Tssr48609 5 121848975 to 121848982 7 + TSS region transcription start site region 48609
Tssr48610 5 121848987 to 121849002 15 + TSS region transcription start site region 48610
Pheta1 5 121849001 to 121854606 5605 + protein coding gene PH domain containing endocytic trafficking adaptor 1
Tssr48611 5 121849021 to 121849037 16 + TSS region transcription start site region 48611
Gm42021 5 121856143 to 121860491 4348 + lncRNA gene predicted gene, 42021
Cux2 5 121857962 to 122050417 192455 - protein coding gene cut-like homeobox 2
Tssr53063 5 121859147 to 121859150 3 - TSS region transcription start site region 53063
Tssr53064 5 121859980 to 121859984 4 - TSS region transcription start site region 53064
Tssr53065 5 121860103 to 121860106 3 - TSS region transcription start site region 53065
Cpgi16537 5 121864597 to 121865021 424 CpG island CpG island 16537
Tssr53066 5 121895344 to 121895349 5 - TSS region transcription start site region 53066
Tssr53067 5 121916720 to 121916757 37 - TSS region transcription start site region 53067
Cpgi16538 5 121948568 to 121948857 289 CpG island CpG island 16538
Tssr48612 5 121981632 to 121981634 2 + TSS region transcription start site region 48612
Tssr53068 5 122002311 to 122002320 9 - TSS region transcription start site region 53068
Tssr53069 5 122002340 to 122002368 28 - TSS region transcription start site region 53069
Tssr53070 5 122019395 to 122019429 34 - TSS region transcription start site region 53070
Gm3970 5 122025330 to 122029697 4367 + antisense lncRNA gene predicted gene 3970
Gm15637 5 122048382 to 122055654 7272 + antisense lncRNA gene predicted gene 15637
Cpgi16539 5 122048947 to 122050896 1949 CpG island CpG island 16539
Tssr53071 5 122049822 to 122049882 60 - TSS region transcription start site region 53071
Tssr53072 5 122050133 to 122050158 25 - TSS region transcription start site region 53072
Tssr53073 5 122050218 to 122050231 13 - TSS region transcription start site region 53073
Cpgi16540 5 122053697 to 122054015 318 CpG island CpG island 16540