Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:120975219-121613577

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117 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rph3a 5 120940499 to 121010092 69593 - protein coding gene rabphilin 3A
Cpgi16517 5 121003888 to 121004105 217 CpG island CpG island 16517
Tssr53003 5 121009001 to 121009017 16 - TSS region transcription start site region 53003
Tssr53004 5 121009049 to 121009051 2 - TSS region transcription start site region 53004
Cpgi16518 5 121009267 to 121009680 413 CpG island CpG island 16518
Tssr53005 5 121009382 to 121009394 12 - TSS region transcription start site region 53005
Tssr53006 5 121009408 to 121009415 7 - TSS region transcription start site region 53006
Tssr53007 5 121009441 to 121009480 39 - TSS region transcription start site region 53007
Tssr53008 5 121009510 to 121009521 11 - TSS region transcription start site region 53008
Tssr53009 5 121009530 to 121009577 47 - TSS region transcription start site region 53009
Tssr53010 5 121009633 to 121009644 11 - TSS region transcription start site region 53010
Tssr53011 5 121010085 to 121010126 41 - TSS region transcription start site region 53011
Tssr53012 5 121122171 to 121122185 14 - TSS region transcription start site region 53012
Ptpn11 5 121130533 to 121191397 60864 - protein coding gene protein tyrosine phosphatase, non-receptor type 11
Tssr53013 5 121157078 to 121157083 5 - TSS region transcription start site region 53013
Tssr53014 5 121163214 to 121163235 21 - TSS region transcription start site region 53014
Gm42930 5 121181737 to 121184996 3259 - unclassified gene predicted gene 42930
Cpgi16519 5 121190499 to 121191935 1436 CpG island CpG island 16519
Tssr53015 5 121191349 to 121191361 12 - TSS region transcription start site region 53015
Tssr53016 5 121191365 to 121191400 35 - TSS region transcription start site region 53016
Tssr53017 5 121191409 to 121191420 11 - TSS region transcription start site region 53017
Tssr48553 5 121191484 to 121191523 39 + TSS region transcription start site region 48553
Cpgi16520 5 121204439 to 121205176 737 CpG island CpG island 16520
Tssr48554 5 121204477 to 121204499 22 + TSS region transcription start site region 48554
Rpl6 5 121204501 to 121209241 4740 + protein coding gene ribosomal protein L6
Tssr48555 5 121204516 to 121204556 40 + TSS region transcription start site region 48555
Tssr48556 5 121204561 to 121204566 5 + TSS region transcription start site region 48556
Tssr48557 5 121204823 to 121204850 27 + TSS region transcription start site region 48557
Gm26205 5 121205010 to 121205143 133 + snoRNA gene predicted gene, 26205
Cpgi16521 5 121216209 to 121216429 220 CpG island CpG island 16521
Cpgi16522 5 121219778 to 121221698 1920 CpG island CpG island 16522
Tssr48558 5 121220191 to 121220243 52 + TSS region transcription start site region 48558
Hectd4 5 121220219 to 121368577 148358 + protein coding gene HECT domain E3 ubiquitin protein ligase 4
Tssr48559 5 121220247 to 121220274 27 + TSS region transcription start site region 48559
Tssr1622 5 121220306 to 121220309 3 + TSS region transcription start site region 1622
Tssr48560 5 121220385 to 121220390 5 + TSS region transcription start site region 48560
Tssr48561 5 121220405 to 121220415 10 + TSS region transcription start site region 48561
Tssr48562 5 121220421 to 121220424 3 + TSS region transcription start site region 48562
Tssr48563 5 121233011 to 121233015 4 + TSS region transcription start site region 48563
Tssr1623 5 121233145 to 121233148 3 + TSS region transcription start site region 1623
D5Mit242 5 121254712 to 121254856 144 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 242
Tssr48564 5 121283657 to 121283666 9 + TSS region transcription start site region 48564
Tssr48565 5 121283677 to 121283694 17 + TSS region transcription start site region 48565
Tssr48566 5 121288111 to 121288117 6 + TSS region transcription start site region 48566
Tssr53018 5 121330312 to 121330313 1 - TSS region transcription start site region 53018
Tssr48567 5 121353964 to 121353968 4 + TSS region transcription start site region 48567
Gm24671 5 121356844 to 121357001 157 + snRNA gene predicted gene, 24671
Tssr48568 5 121367092 to 121367110 18 + TSS region transcription start site region 48568
Tssr48569 5 121367207 to 121367211 4 + TSS region transcription start site region 48569
Trafd1 5 121371725 to 121385627 13902 - protein coding gene TRAF type zinc finger domain containing 1
Tssr53019 5 121373413 to 121373432 19 - TSS region transcription start site region 53019
Tssr53020 5 121374351 to 121374413 62 - TSS region transcription start site region 53020
Tssr53021 5 121374695 to 121374701 6 - TSS region transcription start site region 53021
Gm42917 5 121384010 to 121393465 9455 + antisense lncRNA gene predicted gene 42917
Tssr53022 5 121384069 to 121384117 48 - TSS region transcription start site region 53022
Tssr53023 5 121384533 to 121384560 27 - TSS region transcription start site region 53023
Tssr53024 5 121384850 to 121384854 4 - TSS region transcription start site region 53024
Cpgi16523 5 121384902 to 121386002 1100 CpG island CpG island 16523
Tssr53025 5 121385387 to 121385455 68 - TSS region transcription start site region 53025
Tssr48570 5 121385448 to 121385453 5 + TSS region transcription start site region 48570
Tssr48571 5 121385474 to 121385479 5 + TSS region transcription start site region 48571
Tssr48572 5 121385501 to 121385532 31 + TSS region transcription start site region 48572
Gm42918 5 121385522 to 121387101 1579 + antisense lncRNA gene predicted gene 42918
Tssr53026 5 121385572 to 121385590 18 - TSS region transcription start site region 53026
Tssr53027 5 121385599 to 121385619 20 - TSS region transcription start site region 53027
Gm42020 5 121385671 to 121396387 10716 + lncRNA gene predicted gene, 42020
Cpgi16524 5 121397581 to 121398783 1202 CpG island CpG island 16524
Naa25 5 121397941 to 121442549 44608 + protein coding gene N(alpha)-acetyltransferase 25, NatB auxiliary subunit
Tssr48573 5 121397965 to 121398004 39 + TSS region transcription start site region 48573
Tssr48574 5 121399087 to 121399092 5 + TSS region transcription start site region 48574
Tssr48575 5 121399825 to 121399869 44 + TSS region transcription start site region 48575
Gm43420 5 121402658 to 121404514 1856 + unclassified gene predicted gene 43420
Erp29 5 121444753 to 121452474 7721 - protein coding gene endoplasmic reticulum protein 29
Tssr53028 5 121445383 to 121445415 32 - TSS region transcription start site region 53028
Tssr53029 5 121450135 to 121450152 17 - TSS region transcription start site region 53029
Tssr53030 5 121451303 to 121451315 12 - TSS region transcription start site region 53030
Cpgi16525 5 121451688 to 121453063 1375 CpG island CpG island 16525
Tssr48576 5 121452165 to 121452179 14 + TSS region transcription start site region 48576
Tssr53031 5 121452339 to 121452417 78 - TSS region transcription start site region 53031
Tssr53032 5 121452462 to 121452518 56 - TSS region transcription start site region 53032
Tssr48577 5 121452606 to 121452665 59 + TSS region transcription start site region 48577
Tssr48578 5 121452689 to 121452714 25 + TSS region transcription start site region 48578
Tmem116 5 121452709 to 121517910 65201 + protein coding gene transmembrane protein 116
Tssr48579 5 121463150 to 121463189 39 + TSS region transcription start site region 48579
Tssr48580 5 121463193 to 121463209 16 + TSS region transcription start site region 48580
Tssr48581 5 121463211 to 121463222 11 + TSS region transcription start site region 48581
Gm15546 5 121471563 to 121472388 825 - pseudogene predicted gene 15546
Tssr48582 5 121483784 to 121483796 12 + TSS region transcription start site region 48582
Adam1b 5 121500097 to 121502980 2883 - protein coding gene a disintegrin and metallopeptidase domain 1b
Tssr53033 5 121503397 to 121503440 43 - TSS region transcription start site region 53033
4930477O15Rik 5 121503513 to 121504601 1088 + unclassified gene RIKEN cDNA 4930477O15 gene
Tssr48583 5 121506908 to 121506912 4 + TSS region transcription start site region 48583
Adam1a 5 121518604 to 121521695 3091 - protein coding gene a disintegrin and metallopeptidase domain 1a
Gm42878 5 121518613 to 121545482 26869 - protein coding gene predicted gene 42878
Tssr53034 5 121521560 to 121521563 3 - TSS region transcription start site region 53034
Tssr53035 5 121521573 to 121521599 26 - TSS region transcription start site region 53035
Mapkapk5 5 121525051 to 121545892 20841 - protein coding gene MAP kinase-activated protein kinase 5
Tssr48584 5 121525518 to 121525563 45 + TSS region transcription start site region 48584
Tssr53036 5 121527224 to 121527258 34 - TSS region transcription start site region 53036
Tssr53037 5 121527260 to 121527269 9 - TSS region transcription start site region 53037
Gm15547 5 121530563 to 121530895 332 - pseudogene predicted gene 15547
Cpgi16526 5 121544747 to 121546319 1572 CpG island CpG island 16526
Tssr53038 5 121545713 to 121545748 35 - TSS region transcription start site region 53038
Aldh2 5 121566027 to 121593824 27797 - protein coding gene aldehyde dehydrogenase 2, mitochondrial
Tssr48585 5 121567703 to 121567726 23 + TSS region transcription start site region 48585
Tssr53039 5 121567799 to 121567814 15 - TSS region transcription start site region 53039
Alpq7 5 121567876 to 121567876 0 QTL alcohol preference QTL 7
Tssr53040 5 121568989 to 121569002 13 - TSS region transcription start site region 53040
Tssr53041 5 121572114 to 121572125 11 - TSS region transcription start site region 53041
Tssr53042 5 121572709 to 121572720 11 - TSS region transcription start site region 53042
Tssr53043 5 121576008 to 121576035 27 - TSS region transcription start site region 53043
Cpgi16527 5 121593014 to 121593859 845 CpG island CpG island 16527
Tssr53044 5 121593482 to 121593493 11 - TSS region transcription start site region 53044
Tssr53045 5 121593552 to 121593603 51 - TSS region transcription start site region 53045
Gm42879 5 121593695 to 121595908 2213 + unclassified gene predicted gene 42879
Tssr53046 5 121593773 to 121593789 16 - TSS region transcription start site region 53046
Acad12 5 121598277 to 121618938 20661 - protein coding gene acyl-Coenzyme A dehydrogenase family, member 12