Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:120611613-120811692

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rita1 5 120609058 to 120612589 3531 - protein coding gene RBPJ interacting and tubulin associated 1
Cpgi16505 5 120612024 to 120613801 1777 CpG island CpG island 16505
Tssr52947 5 120612558 to 120612598 40 - TSS region transcription start site region 52947
Tssr48519 5 120613092 to 120613131 39 + TSS region transcription start site region 48519
Ddx54 5 120613107 to 120628592 15485 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 54
Tssr48520 5 120613143 to 120613152 9 + TSS region transcription start site region 48520
Tssr48521 5 120613388 to 120613390 2 + TSS region transcription start site region 48521
Tssr48522 5 120621311 to 120621318 7 + TSS region transcription start site region 48522
Tssr48523 5 120621356 to 120621397 41 + TSS region transcription start site region 48523
Tssr48524 5 120621414 to 120621436 22 + TSS region transcription start site region 48524
Tssr48525 5 120621442 to 120621463 21 + TSS region transcription start site region 48525
Tssr48526 5 120621601 to 120621616 15 + TSS region transcription start site region 48526
Gm43579 5 120626315 to 120627621 1306 - antisense lncRNA gene predicted gene 43579
Cpgi16506 5 120626749 to 120627241 492 CpG island CpG island 16506
Cfap73 5 120628335 to 120634235 5900 - protein coding gene cilia and flagella associated protein 73
Cpgi16507 5 120629725 to 120630126 401 CpG island CpG island 16507
Tssr1621 5 120629761 to 120629771 10 - TSS region transcription start site region 1621
Tssr52948 5 120629978 to 120629988 10 - TSS region transcription start site region 52948
Tssr52949 5 120630007 to 120630019 12 - TSS region transcription start site region 52949
Tssr48527 5 120630045 to 120630056 11 + TSS region transcription start site region 48527
Tssr48528 5 120630066 to 120630077 11 + TSS region transcription start site region 48528
Tssr48529 5 120630082 to 120630089 7 + TSS region transcription start site region 48529
Tssr48530 5 120630094 to 120630101 7 + TSS region transcription start site region 48530
Cpgi16508 5 120631092 to 120631761 669 CpG island CpG island 16508
Tssr52950 5 120634276 to 120634294 18 - TSS region transcription start site region 52950
Gm42657 5 120641621 to 120641831 210 + pseudogene predicted gene 42657
Gm15749 5 120648040 to 120648749 709 + lincRNA gene predicted gene 15749
Cpgi16509 5 120648596 to 120649650 1054 CpG island CpG island 16509
Rasal1 5 120648812 to 120679597 30785 + protein coding gene RAS protein activator like 1 (GAP1 like)
Tssr48531 5 120649213 to 120649259 46 + TSS region transcription start site region 48531
Tssr48532 5 120649336 to 120649347 11 + TSS region transcription start site region 48532
Tssr48533 5 120655385 to 120655389 4 + TSS region transcription start site region 48533
Cpgi16510 5 120662093 to 120662260 167 CpG island CpG island 16510
Tssr48534 5 120678548 to 120678556 8 + TSS region transcription start site region 48534
Tssr48535 5 120678569 to 120678576 7 + TSS region transcription start site region 48535
Dtx1 5 120680203 to 120711669 31466 - protein coding gene deltex 1, E3 ubiquitin ligase
Cpgi16511 5 120680880 to 120681452 572 CpG island CpG island 16511
Cpgi16512 5 120682346 to 120682672 326 CpG island CpG island 16512
Tssr52951 5 120683105 to 120683157 52 - TSS region transcription start site region 52951
Tssr52952 5 120683414 to 120683461 47 - TSS region transcription start site region 52952
Tssr52953 5 120685746 to 120685767 21 - TSS region transcription start site region 52953
Cpgi16513 5 120692224 to 120692407 183 CpG island CpG island 16513
Cpgi16514 5 120694174 to 120695520 1346 CpG island CpG island 16514
Tssr52954 5 120694590 to 120694603 13 - TSS region transcription start site region 52954
Cpgi16515 5 120710067 to 120712162 2095 CpG island CpG island 16515
Tssr52955 5 120711596 to 120711609 13 - TSS region transcription start site region 52955
Tssr52956 5 120711613 to 120711692 79 - TSS region transcription start site region 52956
Tssr52957 5 120711697 to 120711708 11 - TSS region transcription start site region 52957
Tssr48536 5 120711776 to 120711787 11 + TSS region transcription start site region 48536
Cpgi16516 5 120714348 to 120714547 199 CpG island CpG island 16516
Oas2 5 120730333 to 120749853 19520 - protein coding gene 2'-5' oligoadenylate synthetase 2
Tssr48537 5 120735009 to 120735054 45 + TSS region transcription start site region 48537
Tssr52958 5 120735919 to 120735924 5 - TSS region transcription start site region 52958
Tssr52959 5 120743556 to 120743604 48 - TSS region transcription start site region 52959
Tssr52960 5 120743642 to 120743663 21 - TSS region transcription start site region 52960
Tssr52961 5 120743669 to 120743698 29 - TSS region transcription start site region 52961
Tssr52962 5 120743791 to 120743846 55 - TSS region transcription start site region 52962
Tssr52963 5 120743888 to 120743893 5 - TSS region transcription start site region 52963
Tssr52964 5 120744139 to 120744175 36 - TSS region transcription start site region 52964
Tssr52965 5 120744226 to 120744243 17 - TSS region transcription start site region 52965
Tssr52966 5 120744297 to 120744313 16 - TSS region transcription start site region 52966
Tssr52967 5 120744323 to 120744349 26 - TSS region transcription start site region 52967
Tssr52968 5 120745705 to 120745716 11 - TSS region transcription start site region 52968
Tssr52969 5 120745762 to 120745783 21 - TSS region transcription start site region 52969
Gm43068 5 120746036 to 120747308 1272 + unclassified gene predicted gene 43068
Tssr52970 5 120748755 to 120748772 17 - TSS region transcription start site region 52970
Tssr52971 5 120749659 to 120749672 13 - TSS region transcription start site region 52971
Tssr52972 5 120749687 to 120749700 13 - TSS region transcription start site region 52972
Tssr52973 5 120749810 to 120749845 35 - TSS region transcription start site region 52973
Tssr52974 5 120749848 to 120749868 20 - TSS region transcription start site region 52974
Oas3 5 120753098 to 120777659 24561 - protein coding gene 2'-5' oligoadenylate synthetase 3
Tssr52975 5 120753688 to 120753699 11 - TSS region transcription start site region 52975
Tssr48538 5 120753762 to 120753779 17 + TSS region transcription start site region 48538
Tssr48539 5 120753834 to 120753860 26 + TSS region transcription start site region 48539
Tssr48540 5 120753891 to 120753921 30 + TSS region transcription start site region 48540
Tssr52976 5 120753891 to 120753902 11 - TSS region transcription start site region 52976
Tssr52977 5 120753904 to 120753915 11 - TSS region transcription start site region 52977
Tssr48541 5 120753924 to 120753941 17 + TSS region transcription start site region 48541
Tssr52978 5 120753937 to 120753949 12 - TSS region transcription start site region 52978
Tssr48542 5 120753956 to 120754029 73 + TSS region transcription start site region 48542
Tssr52979 5 120753968 to 120753985 17 - TSS region transcription start site region 52979
Tssr52980 5 120753992 to 120754026 34 - TSS region transcription start site region 52980
Tssr48543 5 120754031 to 120754106 75 + TSS region transcription start site region 48543
Tssr52981 5 120754058 to 120754152 94 - TSS region transcription start site region 52981
Tssr48544 5 120754107 to 120754123 16 + TSS region transcription start site region 48544
Tssr52982 5 120754176 to 120754224 48 - TSS region transcription start site region 52982
Tssr52983 5 120754313 to 120754320 7 - TSS region transcription start site region 52983
Tssr52984 5 120754347 to 120754357 10 - TSS region transcription start site region 52984
Tssr52985 5 120754620 to 120754633 13 - TSS region transcription start site region 52985
Tssr52986 5 120756962 to 120756977 15 - TSS region transcription start site region 52986
Tssr52987 5 120771206 to 120771237 31 - TSS region transcription start site region 52987
Tssr52988 5 120772971 to 120772988 17 - TSS region transcription start site region 52988
Tssr52989 5 120773991 to 120774003 12 - TSS region transcription start site region 52989
Tssr52990 5 120774123 to 120774148 25 - TSS region transcription start site region 52990
Tssr52991 5 120777628 to 120777664 36 - TSS region transcription start site region 52991
Gm43069 5 120777796 to 120805623 27827 + antisense lncRNA gene predicted gene 43069
Oas1e 5 120786226 to 120795530 9304 - protein coding gene 2'-5' oligoadenylate synthetase 1E
Oas1c 5 120800194 to 120812514 12320 - protein coding gene 2'-5' oligoadenylate synthetase 1C