Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:120578335-120684235

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tpcn1 5 120534153 to 120588673 54520 - protein coding gene two pore channel 1
Cpgi16501 5 120579261 to 120579449 188 CpG island CpG island 16501
Cpgi16502 5 120579747 to 120580037 290 CpG island CpG island 16502
Tssr48516 5 120587715 to 120587742 27 + TSS region transcription start site region 48516
Cpgi16503 5 120588113 to 120589224 1111 CpG island CpG island 16503
Tssr52944 5 120588615 to 120588651 36 - TSS region transcription start site region 52944
Tssr52945 5 120588662 to 120588669 7 - TSS region transcription start site region 52945
Tssr48517 5 120589003 to 120589019 16 + TSS region transcription start site region 48517
Iqcd 5 120589016 to 120607118 18102 + protein coding gene IQ motif containing D
Tssr48518 5 120589020 to 120589061 41 + TSS region transcription start site region 48518
Gm38700 5 120594305 to 120600028 5723 - lncRNA gene predicted gene, 38700
Gm38465 5 120602096 to 120606643 4547 - lncRNA gene predicted gene, 38465
Cpgi16504 5 120606563 to 120606863 300 CpG island CpG island 16504
Tssr52946 5 120606970 to 120606991 21 - TSS region transcription start site region 52946
Rita1 5 120609058 to 120612589 3531 - protein coding gene RBPJ interacting and tubulin associated 1
Cpgi16505 5 120612024 to 120613801 1777 CpG island CpG island 16505
Tssr52947 5 120612558 to 120612598 40 - TSS region transcription start site region 52947
Tssr48519 5 120613092 to 120613131 39 + TSS region transcription start site region 48519
Ddx54 5 120613107 to 120628592 15485 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 54
Tssr48520 5 120613143 to 120613152 9 + TSS region transcription start site region 48520
Tssr48521 5 120613388 to 120613390 2 + TSS region transcription start site region 48521
Tssr48522 5 120621311 to 120621318 7 + TSS region transcription start site region 48522
Tssr48523 5 120621356 to 120621397 41 + TSS region transcription start site region 48523
Tssr48524 5 120621414 to 120621436 22 + TSS region transcription start site region 48524
Tssr48525 5 120621442 to 120621463 21 + TSS region transcription start site region 48525
Tssr48526 5 120621601 to 120621616 15 + TSS region transcription start site region 48526
Gm43579 5 120626315 to 120627621 1306 - antisense lncRNA gene predicted gene 43579
Cpgi16506 5 120626749 to 120627241 492 CpG island CpG island 16506
Cfap73 5 120628335 to 120634235 5900 - protein coding gene cilia and flagella associated protein 73
Cpgi16507 5 120629725 to 120630126 401 CpG island CpG island 16507
Tssr1621 5 120629761 to 120629771 10 - TSS region transcription start site region 1621
Tssr52948 5 120629978 to 120629988 10 - TSS region transcription start site region 52948
Tssr52949 5 120630007 to 120630019 12 - TSS region transcription start site region 52949
Tssr48527 5 120630045 to 120630056 11 + TSS region transcription start site region 48527
Tssr48528 5 120630066 to 120630077 11 + TSS region transcription start site region 48528
Tssr48529 5 120630082 to 120630089 7 + TSS region transcription start site region 48529
Tssr48530 5 120630094 to 120630101 7 + TSS region transcription start site region 48530
Cpgi16508 5 120631092 to 120631761 669 CpG island CpG island 16508
Tssr52950 5 120634276 to 120634294 18 - TSS region transcription start site region 52950
Gm42657 5 120641621 to 120641831 210 + pseudogene predicted gene 42657
Gm15749 5 120648040 to 120648749 709 + lincRNA gene predicted gene 15749
Cpgi16509 5 120648596 to 120649650 1054 CpG island CpG island 16509
Rasal1 5 120648812 to 120679597 30785 + protein coding gene RAS protein activator like 1 (GAP1 like)
Tssr48531 5 120649213 to 120649259 46 + TSS region transcription start site region 48531
Tssr48532 5 120649336 to 120649347 11 + TSS region transcription start site region 48532
Tssr48533 5 120655385 to 120655389 4 + TSS region transcription start site region 48533
Cpgi16510 5 120662093 to 120662260 167 CpG island CpG island 16510
Tssr48534 5 120678548 to 120678556 8 + TSS region transcription start site region 48534
Tssr48535 5 120678569 to 120678576 7 + TSS region transcription start site region 48535
Dtx1 5 120680203 to 120711669 31466 - protein coding gene deltex 1, E3 ubiquitin ligase
Cpgi16511 5 120680880 to 120681452 572 CpG island CpG island 16511
Cpgi16512 5 120682346 to 120682672 326 CpG island CpG island 16512
Tssr52951 5 120683105 to 120683157 52 - TSS region transcription start site region 52951
Tssr52952 5 120683414 to 120683461 47 - TSS region transcription start site region 52952