Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:120564382-121454394

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230 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sluc33 5 104239005 to 120573921 16334916 QTL susceptibility to lung cancer 33
Tpcn1 5 120534153 to 120588673 54520 - protein coding gene two pore channel 1
Tssr52943 5 120564726 to 120564741 15 - TSS region transcription start site region 52943
Cpgi16500 5 120567327 to 120567582 255 CpG island CpG island 16500
D5Mit159.1 5 120573618 to 120573743 125 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 159.1
D5Mit159 5 120573731 to 120573921 190 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 159
Cpgi16501 5 120579261 to 120579449 188 CpG island CpG island 16501
Cpgi16502 5 120579747 to 120580037 290 CpG island CpG island 16502
Tssr48516 5 120587715 to 120587742 27 + TSS region transcription start site region 48516
Cpgi16503 5 120588113 to 120589224 1111 CpG island CpG island 16503
Tssr52944 5 120588615 to 120588651 36 - TSS region transcription start site region 52944
Tssr52945 5 120588662 to 120588669 7 - TSS region transcription start site region 52945
Tssr48517 5 120589003 to 120589019 16 + TSS region transcription start site region 48517
Iqcd 5 120589016 to 120607118 18102 + protein coding gene IQ motif containing D
Tssr48518 5 120589020 to 120589061 41 + TSS region transcription start site region 48518
Gm38700 5 120594305 to 120600028 5723 - lncRNA gene predicted gene, 38700
Gm38465 5 120602096 to 120606643 4547 - lncRNA gene predicted gene, 38465
Cpgi16504 5 120606563 to 120606863 300 CpG island CpG island 16504
Tssr52946 5 120606970 to 120606991 21 - TSS region transcription start site region 52946
Rita1 5 120609058 to 120612589 3531 - protein coding gene RBPJ interacting and tubulin associated 1
Cpgi16505 5 120612024 to 120613801 1777 CpG island CpG island 16505
Tssr52947 5 120612558 to 120612598 40 - TSS region transcription start site region 52947
Tssr48519 5 120613092 to 120613131 39 + TSS region transcription start site region 48519
Ddx54 5 120613107 to 120628592 15485 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 54
Tssr48520 5 120613143 to 120613152 9 + TSS region transcription start site region 48520
Tssr48521 5 120613388 to 120613390 2 + TSS region transcription start site region 48521
Tssr48522 5 120621311 to 120621318 7 + TSS region transcription start site region 48522
Tssr48523 5 120621356 to 120621397 41 + TSS region transcription start site region 48523
Tssr48524 5 120621414 to 120621436 22 + TSS region transcription start site region 48524
Tssr48525 5 120621442 to 120621463 21 + TSS region transcription start site region 48525
Tssr48526 5 120621601 to 120621616 15 + TSS region transcription start site region 48526
Gm43579 5 120626315 to 120627621 1306 - antisense lncRNA gene predicted gene 43579
Cpgi16506 5 120626749 to 120627241 492 CpG island CpG island 16506
Cfap73 5 120628335 to 120634235 5900 - protein coding gene cilia and flagella associated protein 73
Cpgi16507 5 120629725 to 120630126 401 CpG island CpG island 16507
Tssr1621 5 120629761 to 120629771 10 - TSS region transcription start site region 1621
Tssr52948 5 120629978 to 120629988 10 - TSS region transcription start site region 52948
Tssr52949 5 120630007 to 120630019 12 - TSS region transcription start site region 52949
Tssr48527 5 120630045 to 120630056 11 + TSS region transcription start site region 48527
Tssr48528 5 120630066 to 120630077 11 + TSS region transcription start site region 48528
Tssr48529 5 120630082 to 120630089 7 + TSS region transcription start site region 48529
Tssr48530 5 120630094 to 120630101 7 + TSS region transcription start site region 48530
Cpgi16508 5 120631092 to 120631761 669 CpG island CpG island 16508
Tssr52950 5 120634276 to 120634294 18 - TSS region transcription start site region 52950
Gm42657 5 120641621 to 120641831 210 + pseudogene predicted gene 42657
Gm15749 5 120648040 to 120648749 709 + lincRNA gene predicted gene 15749
Cpgi16509 5 120648596 to 120649650 1054 CpG island CpG island 16509
Rasal1 5 120648812 to 120679597 30785 + protein coding gene RAS protein activator like 1 (GAP1 like)
Tssr48531 5 120649213 to 120649259 46 + TSS region transcription start site region 48531
Tssr48532 5 120649336 to 120649347 11 + TSS region transcription start site region 48532
Tssr48533 5 120655385 to 120655389 4 + TSS region transcription start site region 48533
Cpgi16510 5 120662093 to 120662260 167 CpG island CpG island 16510
Tssr48534 5 120678548 to 120678556 8 + TSS region transcription start site region 48534
Tssr48535 5 120678569 to 120678576 7 + TSS region transcription start site region 48535
Dtx1 5 120680203 to 120711669 31466 - protein coding gene deltex 1, E3 ubiquitin ligase
Cpgi16511 5 120680880 to 120681452 572 CpG island CpG island 16511
Cpgi16512 5 120682346 to 120682672 326 CpG island CpG island 16512
Tssr52951 5 120683105 to 120683157 52 - TSS region transcription start site region 52951
Tssr52952 5 120683414 to 120683461 47 - TSS region transcription start site region 52952
Tssr52953 5 120685746 to 120685767 21 - TSS region transcription start site region 52953
Cpgi16513 5 120692224 to 120692407 183 CpG island CpG island 16513
Cpgi16514 5 120694174 to 120695520 1346 CpG island CpG island 16514
Tssr52954 5 120694590 to 120694603 13 - TSS region transcription start site region 52954
Cpgi16515 5 120710067 to 120712162 2095 CpG island CpG island 16515
Tssr52955 5 120711596 to 120711609 13 - TSS region transcription start site region 52955
Tssr52956 5 120711613 to 120711692 79 - TSS region transcription start site region 52956
Tssr52957 5 120711697 to 120711708 11 - TSS region transcription start site region 52957
Tssr48536 5 120711776 to 120711787 11 + TSS region transcription start site region 48536
Cpgi16516 5 120714348 to 120714547 199 CpG island CpG island 16516
Oas2 5 120730333 to 120749853 19520 - protein coding gene 2'-5' oligoadenylate synthetase 2
Tssr48537 5 120735009 to 120735054 45 + TSS region transcription start site region 48537
Tssr52958 5 120735919 to 120735924 5 - TSS region transcription start site region 52958
Tssr52959 5 120743556 to 120743604 48 - TSS region transcription start site region 52959
Tssr52960 5 120743642 to 120743663 21 - TSS region transcription start site region 52960
Tssr52961 5 120743669 to 120743698 29 - TSS region transcription start site region 52961
Tssr52962 5 120743791 to 120743846 55 - TSS region transcription start site region 52962
Tssr52963 5 120743888 to 120743893 5 - TSS region transcription start site region 52963
Tssr52964 5 120744139 to 120744175 36 - TSS region transcription start site region 52964
Tssr52965 5 120744226 to 120744243 17 - TSS region transcription start site region 52965
Tssr52966 5 120744297 to 120744313 16 - TSS region transcription start site region 52966
Tssr52967 5 120744323 to 120744349 26 - TSS region transcription start site region 52967
Tssr52968 5 120745705 to 120745716 11 - TSS region transcription start site region 52968
Tssr52969 5 120745762 to 120745783 21 - TSS region transcription start site region 52969
Gm43068 5 120746036 to 120747308 1272 + unclassified gene predicted gene 43068
Tssr52970 5 120748755 to 120748772 17 - TSS region transcription start site region 52970
Tssr52971 5 120749659 to 120749672 13 - TSS region transcription start site region 52971
Tssr52972 5 120749687 to 120749700 13 - TSS region transcription start site region 52972
Tssr52973 5 120749810 to 120749845 35 - TSS region transcription start site region 52973
Tssr52974 5 120749848 to 120749868 20 - TSS region transcription start site region 52974
Oas3 5 120753098 to 120777659 24561 - protein coding gene 2'-5' oligoadenylate synthetase 3
Tssr52975 5 120753688 to 120753699 11 - TSS region transcription start site region 52975
Tssr48538 5 120753762 to 120753779 17 + TSS region transcription start site region 48538
Tssr48539 5 120753834 to 120753860 26 + TSS region transcription start site region 48539
Tssr48540 5 120753891 to 120753921 30 + TSS region transcription start site region 48540
Tssr52976 5 120753891 to 120753902 11 - TSS region transcription start site region 52976
Tssr52977 5 120753904 to 120753915 11 - TSS region transcription start site region 52977
Tssr48541 5 120753924 to 120753941 17 + TSS region transcription start site region 48541
Tssr52978 5 120753937 to 120753949 12 - TSS region transcription start site region 52978
Tssr48542 5 120753956 to 120754029 73 + TSS region transcription start site region 48542
Tssr52979 5 120753968 to 120753985 17 - TSS region transcription start site region 52979
Tssr52980 5 120753992 to 120754026 34 - TSS region transcription start site region 52980
Tssr48543 5 120754031 to 120754106 75 + TSS region transcription start site region 48543
Tssr52981 5 120754058 to 120754152 94 - TSS region transcription start site region 52981
Tssr48544 5 120754107 to 120754123 16 + TSS region transcription start site region 48544
Tssr52982 5 120754176 to 120754224 48 - TSS region transcription start site region 52982
Tssr52983 5 120754313 to 120754320 7 - TSS region transcription start site region 52983
Tssr52984 5 120754347 to 120754357 10 - TSS region transcription start site region 52984
Tssr52985 5 120754620 to 120754633 13 - TSS region transcription start site region 52985
Tssr52986 5 120756962 to 120756977 15 - TSS region transcription start site region 52986
Tssr52987 5 120771206 to 120771237 31 - TSS region transcription start site region 52987
Tssr52988 5 120772971 to 120772988 17 - TSS region transcription start site region 52988
Tssr52989 5 120773991 to 120774003 12 - TSS region transcription start site region 52989
Tssr52990 5 120774123 to 120774148 25 - TSS region transcription start site region 52990
Tssr52991 5 120777628 to 120777664 36 - TSS region transcription start site region 52991
Gm43069 5 120777796 to 120805623 27827 + antisense lncRNA gene predicted gene 43069
Oas1e 5 120786226 to 120795530 9304 - protein coding gene 2'-5' oligoadenylate synthetase 1E
Oas1c 5 120800194 to 120812514 12320 - protein coding gene 2'-5' oligoadenylate synthetase 1C
Tssr52992 5 120812484 to 120812493 9 - TSS region transcription start site region 52992
Tssr52993 5 120812506 to 120812539 33 - TSS region transcription start site region 52993
Tssr48545 5 120812625 to 120812668 43 + TSS region transcription start site region 48545
Oas1b 5 120812635 to 120824163 11528 + polymorphic pseudogene 2'-5' oligoadenylate synthetase 1B
Tssr48546 5 120812673 to 120812684 11 + TSS region transcription start site region 48546
Tssr48547 5 120812879 to 120812884 5 + TSS region transcription start site region 48547
Tssr48548 5 120813714 to 120813728 14 + TSS region transcription start site region 48548
Tssr48549 5 120847364 to 120847391 27 + TSS region transcription start site region 48549
Oas1f 5 120847367 to 120857986 10619 + protein coding gene 2'-5' oligoadenylate synthetase 1F
Tssr48550 5 120847411 to 120847423 12 + TSS region transcription start site region 48550
Gm22907 5 120852171 to 120852296 125 - miRNA gene predicted gene, 22907
Tssr48551 5 120854310 to 120854312 2 + TSS region transcription start site region 48551
D5Mit368 5 120860323 to 120860424 101 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 368
Oas1h 5 120861422 to 120873506 12084 + protein coding gene 2'-5' oligoadenylate synthetase 1H
Oas1g 5 120876142 to 120887613 11471 - protein coding gene 2'-5' oligoadenylate synthetase 1G
Tssr52994 5 120887598 to 120887612 14 - TSS region transcription start site region 52994
Oas1a 5 120896256 to 120907521 11265 - protein coding gene 2'-5' oligoadenylate synthetase 1A
Tssr52995 5 120898191 to 120898209 18 - TSS region transcription start site region 52995
Tssr52996 5 120906649 to 120906658 9 - TSS region transcription start site region 52996
Tssr52997 5 120906875 to 120906894 19 - TSS region transcription start site region 52997
Tssr52998 5 120907510 to 120907533 23 - TSS region transcription start site region 52998
Gm7573 5 120913412 to 120932096 18684 - pseudogene predicted gene 7573
Oas1d 5 120914818 to 120921648 6830 + protein coding gene 2'-5' oligoadenylate synthetase 1D
Rph3a 5 120940499 to 121010092 69593 - protein coding gene rabphilin 3A
Tssr52999 5 120941286 to 120941296 10 - TSS region transcription start site region 52999
Tssr53000 5 120941881 to 120941893 12 - TSS region transcription start site region 53000
Tssr53001 5 120941975 to 120941984 9 - TSS region transcription start site region 53001
Gm32185 5 120950395 to 120952768 2373 + lncRNA gene predicted gene, 32185
Tssr48552 5 120952759 to 120952761 2 + TSS region transcription start site region 48552
Tssr53002 5 120955456 to 120955463 7 - TSS region transcription start site region 53002
Gm42656 5 120970043 to 120972347 2304 - unclassified gene predicted gene 42656
Cpgi16517 5 121003888 to 121004105 217 CpG island CpG island 16517
Tssr53003 5 121009001 to 121009017 16 - TSS region transcription start site region 53003
Tssr53004 5 121009049 to 121009051 2 - TSS region transcription start site region 53004
Cpgi16518 5 121009267 to 121009680 413 CpG island CpG island 16518
Tssr53005 5 121009382 to 121009394 12 - TSS region transcription start site region 53005
Tssr53006 5 121009408 to 121009415 7 - TSS region transcription start site region 53006
Tssr53007 5 121009441 to 121009480 39 - TSS region transcription start site region 53007
Tssr53008 5 121009510 to 121009521 11 - TSS region transcription start site region 53008
Tssr53009 5 121009530 to 121009577 47 - TSS region transcription start site region 53009
Tssr53010 5 121009633 to 121009644 11 - TSS region transcription start site region 53010
Tssr53011 5 121010085 to 121010126 41 - TSS region transcription start site region 53011
Tssr53012 5 121122171 to 121122185 14 - TSS region transcription start site region 53012
Ptpn11 5 121130533 to 121191397 60864 - protein coding gene protein tyrosine phosphatase, non-receptor type 11
Tssr53013 5 121157078 to 121157083 5 - TSS region transcription start site region 53013
Tssr53014 5 121163214 to 121163235 21 - TSS region transcription start site region 53014
Gm42930 5 121181737 to 121184996 3259 - unclassified gene predicted gene 42930
Cpgi16519 5 121190499 to 121191935 1436 CpG island CpG island 16519
Tssr53015 5 121191349 to 121191361 12 - TSS region transcription start site region 53015
Tssr53016 5 121191365 to 121191400 35 - TSS region transcription start site region 53016
Tssr53017 5 121191409 to 121191420 11 - TSS region transcription start site region 53017
Tssr48553 5 121191484 to 121191523 39 + TSS region transcription start site region 48553
Cpgi16520 5 121204439 to 121205176 737 CpG island CpG island 16520
Tssr48554 5 121204477 to 121204499 22 + TSS region transcription start site region 48554
Rpl6 5 121204501 to 121209241 4740 + protein coding gene ribosomal protein L6
Tssr48555 5 121204516 to 121204556 40 + TSS region transcription start site region 48555
Tssr48556 5 121204561 to 121204566 5 + TSS region transcription start site region 48556
Tssr48557 5 121204823 to 121204850 27 + TSS region transcription start site region 48557
Gm26205 5 121205010 to 121205143 133 + snoRNA gene predicted gene, 26205
Cpgi16521 5 121216209 to 121216429 220 CpG island CpG island 16521
Cpgi16522 5 121219778 to 121221698 1920 CpG island CpG island 16522
Tssr48558 5 121220191 to 121220243 52 + TSS region transcription start site region 48558
Hectd4 5 121220219 to 121368577 148358 + protein coding gene HECT domain E3 ubiquitin protein ligase 4
Tssr48559 5 121220247 to 121220274 27 + TSS region transcription start site region 48559
Tssr1622 5 121220306 to 121220309 3 + TSS region transcription start site region 1622
Tssr48560 5 121220385 to 121220390 5 + TSS region transcription start site region 48560
Tssr48561 5 121220405 to 121220415 10 + TSS region transcription start site region 48561
Tssr48562 5 121220421 to 121220424 3 + TSS region transcription start site region 48562
Tssr48563 5 121233011 to 121233015 4 + TSS region transcription start site region 48563
Tssr1623 5 121233145 to 121233148 3 + TSS region transcription start site region 1623
D5Mit242 5 121254712 to 121254856 144 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 242
Tssr48564 5 121283657 to 121283666 9 + TSS region transcription start site region 48564
Tssr48565 5 121283677 to 121283694 17 + TSS region transcription start site region 48565
Tssr48566 5 121288111 to 121288117 6 + TSS region transcription start site region 48566
Tssr53018 5 121330312 to 121330313 1 - TSS region transcription start site region 53018
Tssr48567 5 121353964 to 121353968 4 + TSS region transcription start site region 48567
Gm24671 5 121356844 to 121357001 157 + snRNA gene predicted gene, 24671
Tssr48568 5 121367092 to 121367110 18 + TSS region transcription start site region 48568
Tssr48569 5 121367207 to 121367211 4 + TSS region transcription start site region 48569
Trafd1 5 121371725 to 121385627 13902 - protein coding gene TRAF type zinc finger domain containing 1
Tssr53019 5 121373413 to 121373432 19 - TSS region transcription start site region 53019
Tssr53020 5 121374351 to 121374413 62 - TSS region transcription start site region 53020
Tssr53021 5 121374695 to 121374701 6 - TSS region transcription start site region 53021