Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:120564003-120614019

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26 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sluc33 5 104239005 to 120573921 16334916 QTL susceptibility to lung cancer 33
Tpcn1 5 120534153 to 120588673 54520 - protein coding gene two pore channel 1
Tssr52943 5 120564726 to 120564741 15 - TSS region transcription start site region 52943
Cpgi16500 5 120567327 to 120567582 255 CpG island CpG island 16500
D5Mit159.1 5 120573618 to 120573743 125 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 159.1
D5Mit159 5 120573731 to 120573921 190 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 159
Cpgi16501 5 120579261 to 120579449 188 CpG island CpG island 16501
Cpgi16502 5 120579747 to 120580037 290 CpG island CpG island 16502
Tssr48516 5 120587715 to 120587742 27 + TSS region transcription start site region 48516
Cpgi16503 5 120588113 to 120589224 1111 CpG island CpG island 16503
Tssr52944 5 120588615 to 120588651 36 - TSS region transcription start site region 52944
Tssr52945 5 120588662 to 120588669 7 - TSS region transcription start site region 52945
Tssr48517 5 120589003 to 120589019 16 + TSS region transcription start site region 48517
Iqcd 5 120589016 to 120607118 18102 + protein coding gene IQ motif containing D
Tssr48518 5 120589020 to 120589061 41 + TSS region transcription start site region 48518
Gm38700 5 120594305 to 120600028 5723 - lncRNA gene predicted gene, 38700
Gm38465 5 120602096 to 120606643 4547 - lncRNA gene predicted gene, 38465
Cpgi16504 5 120606563 to 120606863 300 CpG island CpG island 16504
Tssr52946 5 120606970 to 120606991 21 - TSS region transcription start site region 52946
Rita1 5 120609058 to 120612589 3531 - protein coding gene RBPJ interacting and tubulin associated 1
Cpgi16505 5 120612024 to 120613801 1777 CpG island CpG island 16505
Tssr52947 5 120612558 to 120612598 40 - TSS region transcription start site region 52947
Tssr48519 5 120613092 to 120613131 39 + TSS region transcription start site region 48519
Ddx54 5 120613107 to 120628592 15485 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 54
Tssr48520 5 120613143 to 120613152 9 + TSS region transcription start site region 48520
Tssr48521 5 120613388 to 120613390 2 + TSS region transcription start site region 48521