Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:120485416-120635436

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sluc33 5 104239005 to 120573921 16334916 QTL susceptibility to lung cancer 33
Plbd2 5 120483893 to 120503623 19730 - protein coding gene phospholipase B domain containing 2
Tssr52927 5 120486097 to 120486124 27 - TSS region transcription start site region 52927
Tssr52928 5 120494400 to 120494421 21 - TSS region transcription start site region 52928
Cpgi16498 5 120502875 to 120503706 831 CpG island CpG island 16498
Tssr52929 5 120503593 to 120503627 34 - TSS region transcription start site region 52929
Cpgi16499 5 120510999 to 120511584 585 CpG island CpG island 16499
Slc8b1 5 120511168 to 120534024 22856 + protein coding gene solute carrier family 8 (sodium/lithium/calcium exchanger), member B1
Tssr48511 5 120511173 to 120511211 38 + TSS region transcription start site region 48511
Tssr48512 5 120511213 to 120511246 33 + TSS region transcription start site region 48512
Tssr48513 5 120513102 to 120513123 21 + TSS region transcription start site region 48513
Tssr52930 5 120516497 to 120516523 26 - TSS region transcription start site region 52930
Tssr48514 5 120519709 to 120519752 43 + TSS region transcription start site region 48514
Tpcn1 5 120534153 to 120588673 54520 - protein coding gene two pore channel 1
Tssr52931 5 120543942 to 120543975 33 - TSS region transcription start site region 52931
Tssr52932 5 120548266 to 120548269 3 - TSS region transcription start site region 52932
Tssr52933 5 120548295 to 120548309 14 - TSS region transcription start site region 52933
Tssr52934 5 120548329 to 120548340 11 - TSS region transcription start site region 52934
2510016D11Rik 5 120552055 to 120553039 984 - unclassified gene RIKEN cDNA 2510016D11 gene
Tssr52935 5 120557795 to 120557824 29 - TSS region transcription start site region 52935
Tssr52936 5 120559753 to 120559756 3 - TSS region transcription start site region 52936
Tssr52937 5 120560245 to 120560295 50 - TSS region transcription start site region 52937
Tssr52938 5 120560352 to 120560372 20 - TSS region transcription start site region 52938
Tssr52939 5 120560373 to 120560402 29 - TSS region transcription start site region 52939
Tssr52940 5 120560404 to 120560413 9 - TSS region transcription start site region 52940
Tssr52941 5 120560416 to 120560436 20 - TSS region transcription start site region 52941
Tssr52942 5 120560902 to 120560932 30 - TSS region transcription start site region 52942
Tssr48515 5 120561036 to 120561081 45 + TSS region transcription start site region 48515
Tssr52943 5 120564726 to 120564741 15 - TSS region transcription start site region 52943
Cpgi16500 5 120567327 to 120567582 255 CpG island CpG island 16500
D5Mit159.1 5 120573618 to 120573743 125 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 159.1
D5Mit159 5 120573731 to 120573921 190 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 159
Cpgi16501 5 120579261 to 120579449 188 CpG island CpG island 16501
Cpgi16502 5 120579747 to 120580037 290 CpG island CpG island 16502
Tssr48516 5 120587715 to 120587742 27 + TSS region transcription start site region 48516
Cpgi16503 5 120588113 to 120589224 1111 CpG island CpG island 16503
Tssr52944 5 120588615 to 120588651 36 - TSS region transcription start site region 52944
Tssr52945 5 120588662 to 120588669 7 - TSS region transcription start site region 52945
Tssr48517 5 120589003 to 120589019 16 + TSS region transcription start site region 48517
Iqcd 5 120589016 to 120607118 18102 + protein coding gene IQ motif containing D
Tssr48518 5 120589020 to 120589061 41 + TSS region transcription start site region 48518
Gm38700 5 120594305 to 120600028 5723 - lncRNA gene predicted gene, 38700
Gm38465 5 120602096 to 120606643 4547 - lncRNA gene predicted gene, 38465
Cpgi16504 5 120606563 to 120606863 300 CpG island CpG island 16504
Tssr52946 5 120606970 to 120606991 21 - TSS region transcription start site region 52946
Rita1 5 120609058 to 120612589 3531 - protein coding gene RBPJ interacting and tubulin associated 1
Cpgi16505 5 120612024 to 120613801 1777 CpG island CpG island 16505
Tssr52947 5 120612558 to 120612598 40 - TSS region transcription start site region 52947
Tssr48519 5 120613092 to 120613131 39 + TSS region transcription start site region 48519
Ddx54 5 120613107 to 120628592 15485 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 54
Tssr48520 5 120613143 to 120613152 9 + TSS region transcription start site region 48520
Tssr48521 5 120613388 to 120613390 2 + TSS region transcription start site region 48521
Tssr48522 5 120621311 to 120621318 7 + TSS region transcription start site region 48522
Tssr48523 5 120621356 to 120621397 41 + TSS region transcription start site region 48523
Tssr48524 5 120621414 to 120621436 22 + TSS region transcription start site region 48524
Tssr48525 5 120621442 to 120621463 21 + TSS region transcription start site region 48525
Tssr48526 5 120621601 to 120621616 15 + TSS region transcription start site region 48526
Gm43579 5 120626315 to 120627621 1306 - antisense lncRNA gene predicted gene 43579
Cpgi16506 5 120626749 to 120627241 492 CpG island CpG island 16506
Cfap73 5 120628335 to 120634235 5900 - protein coding gene cilia and flagella associated protein 73
Cpgi16507 5 120629725 to 120630126 401 CpG island CpG island 16507
Tssr1621 5 120629761 to 120629771 10 - TSS region transcription start site region 1621
Tssr52948 5 120629978 to 120629988 10 - TSS region transcription start site region 52948
Tssr52949 5 120630007 to 120630019 12 - TSS region transcription start site region 52949
Tssr48527 5 120630045 to 120630056 11 + TSS region transcription start site region 48527
Tssr48528 5 120630066 to 120630077 11 + TSS region transcription start site region 48528
Tssr48529 5 120630082 to 120630089 7 + TSS region transcription start site region 48529
Tssr48530 5 120630094 to 120630101 7 + TSS region transcription start site region 48530
Cpgi16508 5 120631092 to 120631761 669 CpG island CpG island 16508
Tssr52950 5 120634276 to 120634294 18 - TSS region transcription start site region 52950