Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:120436097-120536124

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lhx5 5 120431699 to 120441223 9524 + protein coding gene LIM homeobox protein 5
Cpgi16492 5 120435131 to 120436678 1547 CpG island CpG island 16492
Cpgi16493 5 120437924 to 120438404 480 CpG island CpG island 16493
Cpgi16494 5 120439026 to 120439178 152 CpG island CpG island 16494
Cpgi16495 5 120439578 to 120440585 1007 CpG island CpG island 16495
Tssr48508 5 120440588 to 120440607 19 + TSS region transcription start site region 48508
Tssr48509 5 120441299 to 120441307 8 + TSS region transcription start site region 48509
Cpgi16496 5 120457775 to 120457928 153 CpG island CpG island 16496
Sdsl 5 120458186 to 120472810 14624 - protein coding gene serine dehydratase-like
Tssr52924 5 120467296 to 120467351 55 - TSS region transcription start site region 52924
Tssr52925 5 120472817 to 120472830 13 - TSS region transcription start site region 52925
Tssr48510 5 120476522 to 120476538 16 + TSS region transcription start site region 48510
Sds 5 120476547 to 120483932 7385 + protein coding gene serine dehydratase
Gm15690 5 120479842 to 120480903 1061 - antisense lncRNA gene predicted gene 15690
Cpgi16497 5 120481389 to 120481615 226 CpG island CpG island 16497
Plbd2 5 120483893 to 120503623 19730 - protein coding gene phospholipase B domain containing 2
Tssr52926 5 120485068 to 120485086 18 - TSS region transcription start site region 52926
Tssr52927 5 120486097 to 120486124 27 - TSS region transcription start site region 52927
Tssr52928 5 120494400 to 120494421 21 - TSS region transcription start site region 52928
Cpgi16498 5 120502875 to 120503706 831 CpG island CpG island 16498
Tssr52929 5 120503593 to 120503627 34 - TSS region transcription start site region 52929
Cpgi16499 5 120510999 to 120511584 585 CpG island CpG island 16499
Slc8b1 5 120511168 to 120534024 22856 + protein coding gene solute carrier family 8 (sodium/lithium/calcium exchanger), member B1
Tssr48511 5 120511173 to 120511211 38 + TSS region transcription start site region 48511
Tssr48512 5 120511213 to 120511246 33 + TSS region transcription start site region 48512
Tssr48513 5 120513102 to 120513123 21 + TSS region transcription start site region 48513
Tssr52930 5 120516497 to 120516523 26 - TSS region transcription start site region 52930
Tssr48514 5 120519709 to 120519752 43 + TSS region transcription start site region 48514
Tpcn1 5 120534153 to 120588673 54520 - protein coding gene two pore channel 1