Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:119907030-120550233

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm43269 5 119914938 to 119916846 1908 + lincRNA gene predicted gene 43269
Tssr48495 5 119947681 to 119947686 5 + TSS region transcription start site region 48495
Gm31773 5 119958627 to 119959145 518 - lncRNA gene predicted gene, 31773
Tssr48496 5 119959210 to 119959245 35 + TSS region transcription start site region 48496
Gm38554 5 119959243 to 119963380 4137 + lincRNA gene predicted gene, 38554
Gm42018 5 119978552 to 119981384 2832 + lncRNA gene predicted gene, 42018
Gm42019 5 120028225 to 120031958 3733 - lncRNA gene predicted gene, 42019
Tssr1620 5 120029485 to 120029486 1 + TSS region transcription start site region 1620
n-R5s176 5 120064335 to 120064443 108 + rRNA gene nuclear encoded rRNA 5S 176
Tssr48497 5 120076668 to 120076670 2 + TSS region transcription start site region 48497
Cpgi16477 5 120084711 to 120084963 252 CpG island CpG island 16477
Cpgi16478 5 120088644 to 120088832 188 CpG island CpG island 16478
Cpgi16479 5 120116297 to 120116882 585 CpG island CpG island 16479
Tssr48498 5 120116480 to 120116525 45 + TSS region transcription start site region 48498
Rbm19 5 120116513 to 120198971 82458 + protein coding gene RNA binding motif protein 19
Tssr48499 5 120116526 to 120116551 25 + TSS region transcription start site region 48499
Gm10390 5 120121096 to 120139263 18167 - antisense lncRNA gene predicted gene 10390
Tssr52921 5 120139247 to 120139276 29 - TSS region transcription start site region 52921
Tssr52922 5 120139281 to 120139295 14 - TSS region transcription start site region 52922
Tssr48500 5 120145799 to 120145803 4 + TSS region transcription start site region 48500
Tssr48501 5 120172816 to 120172831 15 + TSS region transcription start site region 48501
Cpgi16480 5 120211015 to 120211325 310 CpG island CpG island 16480
Gm31836 5 120222030 to 120235233 13203 - lncRNA gene predicted gene, 31836
D5Mit408 5 120231037 to 120231158 121 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 408
Cpgi16481 5 120241557 to 120241839 282 CpG island CpG island 16481
Cpgi16482 5 120251958 to 120252529 571 CpG island CpG island 16482
Gm42655 5 120255258 to 120256391 1133 + unclassified gene predicted gene 42655
Cpgi16483 5 120269409 to 120269883 474 CpG island CpG island 16483
Gm26474 5 120287726 to 120287847 121 + miRNA gene predicted gene, 26474
Cpgi16484 5 120301837 to 120302920 1083 CpG island CpG island 16484
Cpgi16485 5 120303751 to 120304429 678 CpG island CpG island 16485
Gm42654 5 120339500 to 120345968 6468 - lincRNA gene predicted gene 42654
Cpgi16486 5 120358058 to 120358473 415 CpG island CpG island 16486
Gm27199 5 120419659 to 120431767 12108 - antisense lncRNA gene predicted gene 27199
Gm31976 5 120423794 to 120431680 7886 - lncRNA gene predicted gene, 31976
Cpgi16487 5 120424106 to 120424396 290 CpG island CpG island 16487
Cpgi16488 5 120425682 to 120425847 165 CpG island CpG island 16488
Cpgi16489 5 120427407 to 120428449 1042 CpG island CpG island 16489
Cpgi16490 5 120430859 to 120432784 1925 CpG island CpG island 16490
Lhx5 5 120431699 to 120441223 9524 + protein coding gene LIM homeobox protein 5
Tssr52923 5 120431757 to 120431771 14 - TSS region transcription start site region 52923
Tssr48502 5 120431891 to 120431905 14 + TSS region transcription start site region 48502
Tssr48503 5 120431909 to 120431912 3 + TSS region transcription start site region 48503
Tssr48504 5 120431930 to 120431937 7 + TSS region transcription start site region 48504
Tssr48505 5 120431949 to 120431958 9 + TSS region transcription start site region 48505
Tssr48506 5 120431969 to 120431980 11 + TSS region transcription start site region 48506
Tssr48507 5 120433199 to 120433215 16 + TSS region transcription start site region 48507
Cpgi16491 5 120434355 to 120434730 375 CpG island CpG island 16491
Cpgi16492 5 120435131 to 120436678 1547 CpG island CpG island 16492
Cpgi16493 5 120437924 to 120438404 480 CpG island CpG island 16493
Cpgi16494 5 120439026 to 120439178 152 CpG island CpG island 16494
Cpgi16495 5 120439578 to 120440585 1007 CpG island CpG island 16495
Tssr48508 5 120440588 to 120440607 19 + TSS region transcription start site region 48508
Tssr48509 5 120441299 to 120441307 8 + TSS region transcription start site region 48509
Cpgi16496 5 120457775 to 120457928 153 CpG island CpG island 16496
Sdsl 5 120458186 to 120472810 14624 - protein coding gene serine dehydratase-like
Tssr52924 5 120467296 to 120467351 55 - TSS region transcription start site region 52924
Tssr52925 5 120472817 to 120472830 13 - TSS region transcription start site region 52925
Tssr48510 5 120476522 to 120476538 16 + TSS region transcription start site region 48510
Sds 5 120476547 to 120483932 7385 + protein coding gene serine dehydratase
Gm15690 5 120479842 to 120480903 1061 - antisense lncRNA gene predicted gene 15690
Cpgi16497 5 120481389 to 120481615 226 CpG island CpG island 16497
Plbd2 5 120483893 to 120503623 19730 - protein coding gene phospholipase B domain containing 2
Tssr52926 5 120485068 to 120485086 18 - TSS region transcription start site region 52926
Tssr52927 5 120486097 to 120486124 27 - TSS region transcription start site region 52927
Tssr52928 5 120494400 to 120494421 21 - TSS region transcription start site region 52928
Cpgi16498 5 120502875 to 120503706 831 CpG island CpG island 16498
Tssr52929 5 120503593 to 120503627 34 - TSS region transcription start site region 52929
Cpgi16499 5 120510999 to 120511584 585 CpG island CpG island 16499
Slc8b1 5 120511168 to 120534024 22856 + protein coding gene solute carrier family 8 (sodium/lithium/calcium exchanger), member B1
Tssr48511 5 120511173 to 120511211 38 + TSS region transcription start site region 48511
Tssr48512 5 120511213 to 120511246 33 + TSS region transcription start site region 48512
Tssr48513 5 120513102 to 120513123 21 + TSS region transcription start site region 48513
Tssr52930 5 120516497 to 120516523 26 - TSS region transcription start site region 52930
Tssr48514 5 120519709 to 120519752 43 + TSS region transcription start site region 48514
Tpcn1 5 120534153 to 120588673 54520 - protein coding gene two pore channel 1
Tssr52931 5 120543942 to 120543975 33 - TSS region transcription start site region 52931
Tssr52932 5 120548266 to 120548269 3 - TSS region transcription start site region 52932
Tssr52933 5 120548295 to 120548309 14 - TSS region transcription start site region 52933
Tssr52934 5 120548329 to 120548340 11 - TSS region transcription start site region 52934