Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:119845799-120445803

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tbx5 5 119832668 to 119885219 52551 + protein coding gene T-box 5
D5Mit367 5 119860020 to 119860124 104 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 367
Cpgi16475 5 119866815 to 119867516 701 CpG island CpG island 16475
Tssr48490 5 119871487 to 119871500 13 + TSS region transcription start site region 48490
Tssr48491 5 119876578 to 119876589 11 + TSS region transcription start site region 48491
D5Mit424 5 119880432 to 119880564 132 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 424
oar 5 119880432 to 125451502 5571070 heritable phenotypic marker oarleg
D5Mit425 5 119880441 to 119880564 123 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 425
Cia27 5 119880564 to 75154687 -44725877 QTL collagen induced arthritis QTL 27
Tssr1619 5 119881272 to 119881276 4 + TSS region transcription start site region 1619
Tssr48492 5 119881342 to 119881346 4 + TSS region transcription start site region 48492
Tssr48493 5 119881927 to 119881935 8 + TSS region transcription start site region 48493
Cpgi16476 5 119882981 to 119883467 486 CpG island CpG island 16476
Tssr48494 5 119884319 to 119884321 2 + TSS region transcription start site region 48494
Gm43269 5 119914938 to 119916846 1908 + lincRNA gene predicted gene 43269
Tssr48495 5 119947681 to 119947686 5 + TSS region transcription start site region 48495
Gm31773 5 119958627 to 119959145 518 - lncRNA gene predicted gene, 31773
Tssr48496 5 119959210 to 119959245 35 + TSS region transcription start site region 48496
Gm38554 5 119959243 to 119963380 4137 + lincRNA gene predicted gene, 38554
Gm42018 5 119978552 to 119981384 2832 + lncRNA gene predicted gene, 42018
Gm42019 5 120028225 to 120031958 3733 - lncRNA gene predicted gene, 42019
Tssr1620 5 120029485 to 120029486 1 + TSS region transcription start site region 1620
n-R5s176 5 120064335 to 120064443 108 + rRNA gene nuclear encoded rRNA 5S 176
Tssr48497 5 120076668 to 120076670 2 + TSS region transcription start site region 48497
Cpgi16477 5 120084711 to 120084963 252 CpG island CpG island 16477
Cpgi16478 5 120088644 to 120088832 188 CpG island CpG island 16478
Cpgi16479 5 120116297 to 120116882 585 CpG island CpG island 16479
Tssr48498 5 120116480 to 120116525 45 + TSS region transcription start site region 48498
Rbm19 5 120116513 to 120198971 82458 + protein coding gene RNA binding motif protein 19
Tssr48499 5 120116526 to 120116551 25 + TSS region transcription start site region 48499
Gm10390 5 120121096 to 120139263 18167 - antisense lncRNA gene predicted gene 10390
Tssr52921 5 120139247 to 120139276 29 - TSS region transcription start site region 52921
Tssr52922 5 120139281 to 120139295 14 - TSS region transcription start site region 52922
Tssr48500 5 120145799 to 120145803 4 + TSS region transcription start site region 48500
Tssr48501 5 120172816 to 120172831 15 + TSS region transcription start site region 48501
Cpgi16480 5 120211015 to 120211325 310 CpG island CpG island 16480
Gm31836 5 120222030 to 120235233 13203 - lncRNA gene predicted gene, 31836
D5Mit408 5 120231037 to 120231158 121 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 408
Cpgi16481 5 120241557 to 120241839 282 CpG island CpG island 16481
Cpgi16482 5 120251958 to 120252529 571 CpG island CpG island 16482
Gm42655 5 120255258 to 120256391 1133 + unclassified gene predicted gene 42655
Cpgi16483 5 120269409 to 120269883 474 CpG island CpG island 16483
Gm26474 5 120287726 to 120287847 121 + miRNA gene predicted gene, 26474
Cpgi16484 5 120301837 to 120302920 1083 CpG island CpG island 16484
Cpgi16485 5 120303751 to 120304429 678 CpG island CpG island 16485
Gm42654 5 120339500 to 120345968 6468 - lincRNA gene predicted gene 42654
Cpgi16486 5 120358058 to 120358473 415 CpG island CpG island 16486
Gm27199 5 120419659 to 120431767 12108 - antisense lncRNA gene predicted gene 27199
Gm31976 5 120423794 to 120431680 7886 - lncRNA gene predicted gene, 31976
Cpgi16487 5 120424106 to 120424396 290 CpG island CpG island 16487
Cpgi16488 5 120425682 to 120425847 165 CpG island CpG island 16488
Cpgi16489 5 120427407 to 120428449 1042 CpG island CpG island 16489
Cpgi16490 5 120430859 to 120432784 1925 CpG island CpG island 16490
Lhx5 5 120431699 to 120441223 9524 + protein coding gene LIM homeobox protein 5
Tssr52923 5 120431757 to 120431771 14 - TSS region transcription start site region 52923
Tssr48502 5 120431891 to 120431905 14 + TSS region transcription start site region 48502
Tssr48503 5 120431909 to 120431912 3 + TSS region transcription start site region 48503
Tssr48504 5 120431930 to 120431937 7 + TSS region transcription start site region 48504
Tssr48505 5 120431949 to 120431958 9 + TSS region transcription start site region 48505
Tssr48506 5 120431969 to 120431980 11 + TSS region transcription start site region 48506
Tssr48507 5 120433199 to 120433215 16 + TSS region transcription start site region 48507
Cpgi16491 5 120434355 to 120434730 375 CpG island CpG island 16491
Cpgi16492 5 120435131 to 120436678 1547 CpG island CpG island 16492
Cpgi16493 5 120437924 to 120438404 480 CpG island CpG island 16493
Cpgi16494 5 120439026 to 120439178 152 CpG island CpG island 16494
Cpgi16495 5 120439578 to 120440585 1007 CpG island CpG island 16495
Tssr48508 5 120440588 to 120440607 19 + TSS region transcription start site region 48508
Tssr48509 5 120441299 to 120441307 8 + TSS region transcription start site region 48509