Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:119680135-119990151

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tbx3 5 119670669 to 119684724 14055 + protein coding gene T-box 3
Tssr48468 5 119680221 to 119680236 15 + TSS region transcription start site region 48468
Tssr48469 5 119680266 to 119680287 21 + TSS region transcription start site region 48469
Cpgi16458 5 119680286 to 119681121 835 CpG island CpG island 16458
Tssr48470 5 119680368 to 119680423 55 + TSS region transcription start site region 48470
Tssr48471 5 119681012 to 119681013 1 + TSS region transcription start site region 48471
Cpgi16459 5 119682582 to 119683066 484 CpG island CpG island 16459
Tssr1618 5 119684530 to 119684545 15 + TSS region transcription start site region 1618
Tbx3os2 5 119685095 to 119691218 6123 - lincRNA gene T-box 3, opposite strand 2
Tssr48472 5 119686857 to 119686865 8 + TSS region transcription start site region 48472
Cpgi16460 5 119687063 to 119687379 316 CpG island CpG island 16460
Cpgi16461 5 119687888 to 119688136 248 CpG island CpG island 16461
Cpgi16462 5 119691133 to 119691328 195 CpG island CpG island 16462
Tssr52915 5 119691211 to 119691254 43 - TSS region transcription start site region 52915
Tssr52916 5 119691256 to 119691266 10 - TSS region transcription start site region 52916
Cpgi16463 5 119749251 to 119749463 212 CpG island CpG island 16463
Gm42017 5 119784461 to 119786959 2498 - lncRNA gene predicted gene, 42017
Cpgi16464 5 119796504 to 119796983 479 CpG island CpG island 16464
Tssr48473 5 119796513 to 119796544 31 + TSS region transcription start site region 48473
Tssr48474 5 119796547 to 119796556 9 + TSS region transcription start site region 48474
Tssr48475 5 119796643 to 119796657 14 + TSS region transcription start site region 48475
Tssr48476 5 119796659 to 119796682 23 + TSS region transcription start site region 48476
Cpgi16465 5 119797712 to 119797981 269 CpG island CpG island 16465
Cpgi16466 5 119800504 to 119800864 360 CpG island CpG island 16466
Gm5563 5 119802679 to 119832028 29349 - lncRNA gene predicted gene 5563
Cpgi16467 5 119803162 to 119804880 1718 CpG island CpG island 16467
1700021F13Rik 5 119805329 to 119807869 2540 - lincRNA gene RIKEN cDNA 1700021F13 gene
Tssr52917 5 119806404 to 119806419 15 - TSS region transcription start site region 52917
Nidd7k 5 119806972 to 149423861 29616889 QTL Nidd7 on KK-A
repro2 5 119806972 to 123412074 3605102 heritable phenotypic marker reproductive mutant 2, JAX Reproductive Mutagenesis Program
Sluc33b 5 119806972 to 119807131 159 QTL susceptibility to lung cancer 33b
Bbaa24 5 119806972 to 141714711 21907739 QTL B.burgdorferi-associated arthritis 24
D5Mit431 5 119806972 to 119807087 115 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 431
D5Mit68 5 119806972 to 119807131 159 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 68
Tssr52918 5 119807631 to 119807632 1 - TSS region transcription start site region 52918
Tssr52919 5 119807650 to 119807666 16 - TSS region transcription start site region 52919
Gm43050 5 119828448 to 119831920 3472 - lincRNA gene predicted gene 43050
Cpgi16468 5 119831029 to 119831892 863 CpG island CpG island 16468
Tssr52920 5 119831980 to 119831992 12 - TSS region transcription start site region 52920
Tssr48477 5 119832084 to 119832097 13 + TSS region transcription start site region 48477
Tssr48478 5 119832102 to 119832127 25 + TSS region transcription start site region 48478
Cpgi16469 5 119832587 to 119832774 187 CpG island CpG island 16469
Tbx5 5 119832668 to 119885219 52551 + protein coding gene T-box 5
Tssr48479 5 119832682 to 119832692 10 + TSS region transcription start site region 48479
Tssr48480 5 119832702 to 119832715 13 + TSS region transcription start site region 48480
Tssr48481 5 119835095 to 119835104 9 + TSS region transcription start site region 48481
Tssr48482 5 119835115 to 119835118 3 + TSS region transcription start site region 48482
Tssr48483 5 119835121 to 119835132 11 + TSS region transcription start site region 48483
Tssr48484 5 119835135 to 119835151 16 + TSS region transcription start site region 48484
Tssr48485 5 119835152 to 119835167 15 + TSS region transcription start site region 48485
Tssr48486 5 119835170 to 119835176 6 + TSS region transcription start site region 48486
Cpgi16470 5 119835212 to 119835605 393 CpG island CpG island 16470
Tssr48487 5 119836697 to 119836727 30 + TSS region transcription start site region 48487
Cpgi16471 5 119836752 to 119837489 737 CpG island CpG island 16471
Tssr48488 5 119836789 to 119836806 17 + TSS region transcription start site region 48488
Tssr48489 5 119836859 to 119836879 20 + TSS region transcription start site region 48489
Cpgi16472 5 119839884 to 119840132 248 CpG island CpG island 16472
Cpgi16473 5 119841710 to 119841981 271 CpG island CpG island 16473
Cpgi16474 5 119844987 to 119845276 289 CpG island CpG island 16474
D5Mit367 5 119860020 to 119860124 104 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 367
Cpgi16475 5 119866815 to 119867516 701 CpG island CpG island 16475
Tssr48490 5 119871487 to 119871500 13 + TSS region transcription start site region 48490
Tssr48491 5 119876578 to 119876589 11 + TSS region transcription start site region 48491
oar 5 119880432 to 125451502 5571070 heritable phenotypic marker oarleg
D5Mit424 5 119880432 to 119880564 132 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 424
D5Mit425 5 119880441 to 119880564 123 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 425
Cia27 5 119880564 to 75154687 -44725877 QTL collagen induced arthritis QTL 27
Tssr1619 5 119881272 to 119881276 4 + TSS region transcription start site region 1619
Tssr48492 5 119881342 to 119881346 4 + TSS region transcription start site region 48492
Tssr48493 5 119881927 to 119881935 8 + TSS region transcription start site region 48493
Cpgi16476 5 119882981 to 119883467 486 CpG island CpG island 16476
Tssr48494 5 119884319 to 119884321 2 + TSS region transcription start site region 48494
Gm43269 5 119914938 to 119916846 1908 + lincRNA gene predicted gene 43269
Tssr48495 5 119947681 to 119947686 5 + TSS region transcription start site region 48495
Gm31773 5 119958627 to 119959145 518 - lncRNA gene predicted gene, 31773
Tssr48496 5 119959210 to 119959245 35 + TSS region transcription start site region 48496
Gm38554 5 119959243 to 119963380 4137 + lincRNA gene predicted gene, 38554
Gm42018 5 119978552 to 119981384 2832 + lncRNA gene predicted gene, 42018