Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:119601668-120551670

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188 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tbx3os1 5 119597977 to 119671328 73351 - antisense lncRNA gene T-box 3, opposite strand 1
Tssr52909 5 119616684 to 119616696 12 - TSS region transcription start site region 52909
Tssr48450 5 119625939 to 119625966 27 + TSS region transcription start site region 48450
Gm16063 5 119625942 to 119634462 8520 + lincRNA gene predicted gene 16063
Cpgi16452 5 119626755 to 119627010 255 CpG island CpG island 16452
Tssr52910 5 119628707 to 119628754 47 - TSS region transcription start site region 52910
Gm16064 5 119646134 to 119659262 13128 + lincRNA gene predicted gene 16064
Cpgi16453 5 119656918 to 119657142 224 CpG island CpG island 16453
Cpgi16454 5 119660656 to 119660937 281 CpG island CpG island 16454
Cpgi16455 5 119668188 to 119669140 952 CpG island CpG island 16455
Cpgi16456 5 119669654 to 119671483 1829 CpG island CpG island 16456
Tssr48451 5 119669876 to 119669916 40 + TSS region transcription start site region 48451
Tssr48452 5 119669943 to 119669954 11 + TSS region transcription start site region 48452
Tssr48453 5 119670400 to 119670407 7 + TSS region transcription start site region 48453
Tssr48454 5 119670658 to 119670676 18 + TSS region transcription start site region 48454
Tbx3 5 119670669 to 119684724 14055 + protein coding gene T-box 3
Tssr48455 5 119670699 to 119670704 5 + TSS region transcription start site region 48455
Tssr1615 5 119670712 to 119670721 9 + TSS region transcription start site region 1615
Tssr1616 5 119670726 to 119670730 4 + TSS region transcription start site region 1616
Tssr48456 5 119670798 to 119670801 3 + TSS region transcription start site region 48456
Tssr48457 5 119670825 to 119670836 11 + TSS region transcription start site region 48457
Tssr52911 5 119670838 to 119670844 6 - TSS region transcription start site region 52911
Tssr48458 5 119670972 to 119670983 11 + TSS region transcription start site region 48458
Tssr1617 5 119670984 to 119670991 7 + TSS region transcription start site region 1617
Tssr48459 5 119671011 to 119671040 29 + TSS region transcription start site region 48459
Tssr48460 5 119671082 to 119671091 9 + TSS region transcription start site region 48460
Tssr48461 5 119671160 to 119671162 2 + TSS region transcription start site region 48461
Tssr48462 5 119671253 to 119671273 20 + TSS region transcription start site region 48462
Tssr52912 5 119671360 to 119671369 9 - TSS region transcription start site region 52912
Tssr52913 5 119671378 to 119671398 20 - TSS region transcription start site region 52913
Tssr48463 5 119671437 to 119671452 15 + TSS region transcription start site region 48463
Tssr52914 5 119671498 to 119671510 12 - TSS region transcription start site region 52914
Tssr48464 5 119671590 to 119671613 23 + TSS region transcription start site region 48464
Tssr48465 5 119671652 to 119671662 10 + TSS region transcription start site region 48465
Tssr48466 5 119671683 to 119671699 16 + TSS region transcription start site region 48466
Cpgi16457 5 119671736 to 119672293 557 CpG island CpG island 16457
Tssr48467 5 119671828 to 119671864 36 + TSS region transcription start site region 48467
Tssr48468 5 119680221 to 119680236 15 + TSS region transcription start site region 48468
Tssr48469 5 119680266 to 119680287 21 + TSS region transcription start site region 48469
Cpgi16458 5 119680286 to 119681121 835 CpG island CpG island 16458
Tssr48470 5 119680368 to 119680423 55 + TSS region transcription start site region 48470
Tssr48471 5 119681012 to 119681013 1 + TSS region transcription start site region 48471
Cpgi16459 5 119682582 to 119683066 484 CpG island CpG island 16459
Tssr1618 5 119684530 to 119684545 15 + TSS region transcription start site region 1618
Tbx3os2 5 119685095 to 119691218 6123 - lincRNA gene T-box 3, opposite strand 2
Tssr48472 5 119686857 to 119686865 8 + TSS region transcription start site region 48472
Cpgi16460 5 119687063 to 119687379 316 CpG island CpG island 16460
Cpgi16461 5 119687888 to 119688136 248 CpG island CpG island 16461
Cpgi16462 5 119691133 to 119691328 195 CpG island CpG island 16462
Tssr52915 5 119691211 to 119691254 43 - TSS region transcription start site region 52915
Tssr52916 5 119691256 to 119691266 10 - TSS region transcription start site region 52916
Cpgi16463 5 119749251 to 119749463 212 CpG island CpG island 16463
Gm42017 5 119784461 to 119786959 2498 - lncRNA gene predicted gene, 42017
Cpgi16464 5 119796504 to 119796983 479 CpG island CpG island 16464
Tssr48473 5 119796513 to 119796544 31 + TSS region transcription start site region 48473
Tssr48474 5 119796547 to 119796556 9 + TSS region transcription start site region 48474
Tssr48475 5 119796643 to 119796657 14 + TSS region transcription start site region 48475
Tssr48476 5 119796659 to 119796682 23 + TSS region transcription start site region 48476
Cpgi16465 5 119797712 to 119797981 269 CpG island CpG island 16465
Cpgi16466 5 119800504 to 119800864 360 CpG island CpG island 16466
Gm5563 5 119802679 to 119832028 29349 - lncRNA gene predicted gene 5563
Cpgi16467 5 119803162 to 119804880 1718 CpG island CpG island 16467
1700021F13Rik 5 119805329 to 119807869 2540 - lincRNA gene RIKEN cDNA 1700021F13 gene
Tssr52917 5 119806404 to 119806419 15 - TSS region transcription start site region 52917
Nidd7k 5 119806972 to 149423861 29616889 QTL Nidd7 on KK-A
repro2 5 119806972 to 123412074 3605102 heritable phenotypic marker reproductive mutant 2, JAX Reproductive Mutagenesis Program
Sluc33b 5 119806972 to 119807131 159 QTL susceptibility to lung cancer 33b
D5Mit68 5 119806972 to 119807131 159 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 68
D5Mit431 5 119806972 to 119807087 115 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 431
Bbaa24 5 119806972 to 141714711 21907739 QTL B.burgdorferi-associated arthritis 24
Tssr52918 5 119807631 to 119807632 1 - TSS region transcription start site region 52918
Tssr52919 5 119807650 to 119807666 16 - TSS region transcription start site region 52919
Gm43050 5 119828448 to 119831920 3472 - lincRNA gene predicted gene 43050
Cpgi16468 5 119831029 to 119831892 863 CpG island CpG island 16468
Tssr52920 5 119831980 to 119831992 12 - TSS region transcription start site region 52920
Tssr48477 5 119832084 to 119832097 13 + TSS region transcription start site region 48477
Tssr48478 5 119832102 to 119832127 25 + TSS region transcription start site region 48478
Cpgi16469 5 119832587 to 119832774 187 CpG island CpG island 16469
Tbx5 5 119832668 to 119885219 52551 + protein coding gene T-box 5
Tssr48479 5 119832682 to 119832692 10 + TSS region transcription start site region 48479
Tssr48480 5 119832702 to 119832715 13 + TSS region transcription start site region 48480
Tssr48481 5 119835095 to 119835104 9 + TSS region transcription start site region 48481
Tssr48482 5 119835115 to 119835118 3 + TSS region transcription start site region 48482
Tssr48483 5 119835121 to 119835132 11 + TSS region transcription start site region 48483
Tssr48484 5 119835135 to 119835151 16 + TSS region transcription start site region 48484
Tssr48485 5 119835152 to 119835167 15 + TSS region transcription start site region 48485
Tssr48486 5 119835170 to 119835176 6 + TSS region transcription start site region 48486
Cpgi16470 5 119835212 to 119835605 393 CpG island CpG island 16470
Tssr48487 5 119836697 to 119836727 30 + TSS region transcription start site region 48487
Cpgi16471 5 119836752 to 119837489 737 CpG island CpG island 16471
Tssr48488 5 119836789 to 119836806 17 + TSS region transcription start site region 48488
Tssr48489 5 119836859 to 119836879 20 + TSS region transcription start site region 48489
Cpgi16472 5 119839884 to 119840132 248 CpG island CpG island 16472
Cpgi16473 5 119841710 to 119841981 271 CpG island CpG island 16473
Cpgi16474 5 119844987 to 119845276 289 CpG island CpG island 16474
D5Mit367 5 119860020 to 119860124 104 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 367
Cpgi16475 5 119866815 to 119867516 701 CpG island CpG island 16475
Tssr48490 5 119871487 to 119871500 13 + TSS region transcription start site region 48490
Tssr48491 5 119876578 to 119876589 11 + TSS region transcription start site region 48491
oar 5 119880432 to 125451502 5571070 heritable phenotypic marker oarleg
D5Mit424 5 119880432 to 119880564 132 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 424
D5Mit425 5 119880441 to 119880564 123 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 425
Cia27 5 119880564 to 75154687 -44725877 QTL collagen induced arthritis QTL 27
Tssr1619 5 119881272 to 119881276 4 + TSS region transcription start site region 1619
Tssr48492 5 119881342 to 119881346 4 + TSS region transcription start site region 48492
Tssr48493 5 119881927 to 119881935 8 + TSS region transcription start site region 48493
Cpgi16476 5 119882981 to 119883467 486 CpG island CpG island 16476
Tssr48494 5 119884319 to 119884321 2 + TSS region transcription start site region 48494
Gm43269 5 119914938 to 119916846 1908 + lincRNA gene predicted gene 43269
Tssr48495 5 119947681 to 119947686 5 + TSS region transcription start site region 48495
Gm31773 5 119958627 to 119959145 518 - lncRNA gene predicted gene, 31773
Tssr48496 5 119959210 to 119959245 35 + TSS region transcription start site region 48496
Gm38554 5 119959243 to 119963380 4137 + lincRNA gene predicted gene, 38554
Gm42018 5 119978552 to 119981384 2832 + lncRNA gene predicted gene, 42018
Gm42019 5 120028225 to 120031958 3733 - lncRNA gene predicted gene, 42019
Tssr1620 5 120029485 to 120029486 1 + TSS region transcription start site region 1620
n-R5s176 5 120064335 to 120064443 108 + rRNA gene nuclear encoded rRNA 5S 176
Tssr48497 5 120076668 to 120076670 2 + TSS region transcription start site region 48497
Cpgi16477 5 120084711 to 120084963 252 CpG island CpG island 16477
Cpgi16478 5 120088644 to 120088832 188 CpG island CpG island 16478
Cpgi16479 5 120116297 to 120116882 585 CpG island CpG island 16479
Tssr48498 5 120116480 to 120116525 45 + TSS region transcription start site region 48498
Rbm19 5 120116513 to 120198971 82458 + protein coding gene RNA binding motif protein 19
Tssr48499 5 120116526 to 120116551 25 + TSS region transcription start site region 48499
Gm10390 5 120121096 to 120139263 18167 - antisense lncRNA gene predicted gene 10390
Tssr52921 5 120139247 to 120139276 29 - TSS region transcription start site region 52921
Tssr52922 5 120139281 to 120139295 14 - TSS region transcription start site region 52922
Tssr48500 5 120145799 to 120145803 4 + TSS region transcription start site region 48500
Tssr48501 5 120172816 to 120172831 15 + TSS region transcription start site region 48501
Cpgi16480 5 120211015 to 120211325 310 CpG island CpG island 16480
Gm31836 5 120222030 to 120235233 13203 - lncRNA gene predicted gene, 31836
D5Mit408 5 120231037 to 120231158 121 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 408
Cpgi16481 5 120241557 to 120241839 282 CpG island CpG island 16481
Cpgi16482 5 120251958 to 120252529 571 CpG island CpG island 16482
Gm42655 5 120255258 to 120256391 1133 + unclassified gene predicted gene 42655
Cpgi16483 5 120269409 to 120269883 474 CpG island CpG island 16483
Gm26474 5 120287726 to 120287847 121 + miRNA gene predicted gene, 26474
Cpgi16484 5 120301837 to 120302920 1083 CpG island CpG island 16484
Cpgi16485 5 120303751 to 120304429 678 CpG island CpG island 16485
Gm42654 5 120339500 to 120345968 6468 - lincRNA gene predicted gene 42654
Cpgi16486 5 120358058 to 120358473 415 CpG island CpG island 16486
Gm27199 5 120419659 to 120431767 12108 - antisense lncRNA gene predicted gene 27199
Gm31976 5 120423794 to 120431680 7886 - lncRNA gene predicted gene, 31976
Cpgi16487 5 120424106 to 120424396 290 CpG island CpG island 16487
Cpgi16488 5 120425682 to 120425847 165 CpG island CpG island 16488
Cpgi16489 5 120427407 to 120428449 1042 CpG island CpG island 16489
Cpgi16490 5 120430859 to 120432784 1925 CpG island CpG island 16490
Lhx5 5 120431699 to 120441223 9524 + protein coding gene LIM homeobox protein 5
Tssr52923 5 120431757 to 120431771 14 - TSS region transcription start site region 52923
Tssr48502 5 120431891 to 120431905 14 + TSS region transcription start site region 48502
Tssr48503 5 120431909 to 120431912 3 + TSS region transcription start site region 48503
Tssr48504 5 120431930 to 120431937 7 + TSS region transcription start site region 48504
Tssr48505 5 120431949 to 120431958 9 + TSS region transcription start site region 48505
Tssr48506 5 120431969 to 120431980 11 + TSS region transcription start site region 48506
Tssr48507 5 120433199 to 120433215 16 + TSS region transcription start site region 48507
Cpgi16491 5 120434355 to 120434730 375 CpG island CpG island 16491
Cpgi16492 5 120435131 to 120436678 1547 CpG island CpG island 16492
Cpgi16493 5 120437924 to 120438404 480 CpG island CpG island 16493
Cpgi16494 5 120439026 to 120439178 152 CpG island CpG island 16494
Cpgi16495 5 120439578 to 120440585 1007 CpG island CpG island 16495
Tssr48508 5 120440588 to 120440607 19 + TSS region transcription start site region 48508
Tssr48509 5 120441299 to 120441307 8 + TSS region transcription start site region 48509
Cpgi16496 5 120457775 to 120457928 153 CpG island CpG island 16496
Sdsl 5 120458186 to 120472810 14624 - protein coding gene serine dehydratase-like
Tssr52924 5 120467296 to 120467351 55 - TSS region transcription start site region 52924
Tssr52925 5 120472817 to 120472830 13 - TSS region transcription start site region 52925
Tssr48510 5 120476522 to 120476538 16 + TSS region transcription start site region 48510
Sds 5 120476547 to 120483932 7385 + protein coding gene serine dehydratase
Gm15690 5 120479842 to 120480903 1061 - antisense lncRNA gene predicted gene 15690
Cpgi16497 5 120481389 to 120481615 226 CpG island CpG island 16497
Plbd2 5 120483893 to 120503623 19730 - protein coding gene phospholipase B domain containing 2
Tssr52926 5 120485068 to 120485086 18 - TSS region transcription start site region 52926
Tssr52927 5 120486097 to 120486124 27 - TSS region transcription start site region 52927
Tssr52928 5 120494400 to 120494421 21 - TSS region transcription start site region 52928
Cpgi16498 5 120502875 to 120503706 831 CpG island CpG island 16498
Tssr52929 5 120503593 to 120503627 34 - TSS region transcription start site region 52929
Cpgi16499 5 120510999 to 120511584 585 CpG island CpG island 16499
Slc8b1 5 120511168 to 120534024 22856 + protein coding gene solute carrier family 8 (sodium/lithium/calcium exchanger), member B1
Tssr48511 5 120511173 to 120511211 38 + TSS region transcription start site region 48511
Tssr48512 5 120511213 to 120511246 33 + TSS region transcription start site region 48512
Tssr48513 5 120513102 to 120513123 21 + TSS region transcription start site region 48513
Tssr52930 5 120516497 to 120516523 26 - TSS region transcription start site region 52930
Tssr48514 5 120519709 to 120519752 43 + TSS region transcription start site region 48514
Tpcn1 5 120534153 to 120588673 54520 - protein coding gene two pore channel 1
Tssr52931 5 120543942 to 120543975 33 - TSS region transcription start site region 52931
Tssr52932 5 120548266 to 120548269 3 - TSS region transcription start site region 52932
Tssr52933 5 120548295 to 120548309 14 - TSS region transcription start site region 52933
Tssr52934 5 120548329 to 120548340 11 - TSS region transcription start site region 52934