Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:11899662-13539696

Filter by:
47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm43131 5 11900483 to 11916836 16353 - lincRNA gene predicted gene 43131
4933402N22Rik 5 11918043 to 11922804 4761 + protein coding gene RIKEN cDNA 4933402N22 gene
Gm5288 5 11927622 to 11928718 1096 + pseudogene predicted gene 5288
Gm29066 5 12089537 to 12097647 8110 + lincRNA gene predicted gene 29066
Gm38242 5 12092020 to 12099441 7421 - unclassified gene predicted gene, 38242
Gm42910 5 12142041 to 12144961 2920 - unclassified gene predicted gene 42910
Gm8953 5 12354680 to 12355375 695 - pseudogene predicted gene 8953
Tssr50122 5 12355771 to 12355780 9 - TSS region transcription start site region 50122
Gmmq8 5 12371157 to 12371157 0 QTL gastrocnemius muscle mass QTL 8
Tssr45165 5 12374655 to 12374670 15 + TSS region transcription start site region 45165
Tssr45166 5 12383156 to 12383177 21 + TSS region transcription start site region 45166
Cpgi15547 5 12383193 to 12384026 833 CpG island CpG island 15547
Tssr45167 5 12383300 to 12383322 22 + TSS region transcription start site region 45167
Tssr45168 5 12383325 to 12383336 11 + TSS region transcription start site region 45168
Tssr45169 5 12383341 to 12383351 10 + TSS region transcription start site region 45169
Tssr45170 5 12383377 to 12383395 18 + TSS region transcription start site region 45170
Sema3d 5 12383385 to 12588948 205563 + protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D
Tssr45171 5 12383483 to 12383543 60 + TSS region transcription start site region 45171
Tssr45172 5 12466874 to 12466879 5 + TSS region transcription start site region 45172
Gm8925 5 12478866 to 12479628 762 - pseudogene predicted gene 8925
Gm42909 5 12554632 to 12558250 3618 + unclassified gene predicted gene 42909
Gm42580 5 12669155 to 12670728 1573 - pseudogene predicted gene 42580
Tssr1422 5 12719662 to 12719696 34 + TSS region transcription start site region 1422
Tssr45173 5 12719819 to 12719867 48 + TSS region transcription start site region 45173
Cpgi15548 5 12928834 to 12929155 321 CpG island CpG island 15548
Gm23243 5 12940370 to 12940479 109 + miRNA gene predicted gene, 23243
Gm10481 5 13042433 to 13043434 1001 - pseudogene predicted gene 10481
Gm6641 5 13080828 to 13082142 1314 + pseudogene predicted gene 6641
Gm10108 5 13121448 to 13121766 318 - pseudogene predicted pseudogene 10108
Sema3a 5 13125414 to 13602565 477151 + protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
Tssr45174 5 13125458 to 13125470 12 + TSS region transcription start site region 45174
Tssr45175 5 13125474 to 13125512 38 + TSS region transcription start site region 45175
Tssr45176 5 13125513 to 13125537 24 + TSS region transcription start site region 45176
Tssr45177 5 13125558 to 13125575 17 + TSS region transcription start site region 45177
Tssr45178 5 13125585 to 13125610 25 + TSS region transcription start site region 45178
Tssr45179 5 13125613 to 13125635 22 + TSS region transcription start site region 45179
Gm42680 5 13133459 to 13135958 2499 - unclassified gene predicted gene 42680
Tssr45180 5 13398680 to 13398696 16 + TSS region transcription start site region 45180
Tssr45181 5 13398704 to 13398726 22 + TSS region transcription start site region 45181
Tssr45182 5 13398828 to 13398871 43 + TSS region transcription start site region 45182
Cpgi15549 5 13398978 to 13399582 604 CpG island CpG island 15549
Tssr45183 5 13399325 to 13399382 57 + TSS region transcription start site region 45183
Tssr45184 5 13399387 to 13399415 28 + TSS region transcription start site region 45184
Tssr45185 5 13399495 to 13399519 24 + TSS region transcription start site region 45185
Tssr45186 5 13399751 to 13399765 14 + TSS region transcription start site region 45186
Gm43130 5 13481028 to 13484934 3906 + unclassified gene predicted gene 43130
Gm42676 5 13525723 to 13528408 2685 + unclassified gene predicted gene 42676